Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme119130g00001 ATGGATGGAATACCGATTGGAAGAAAAATTGATTTGAGTGCTCACAGTTCCTATGAAACATTGGCACAAACATTGGAGGACATGTTTGACGAATCAACTACAAATGTCACTTGCAAAGGATCAAATGGGGAGGACCACAACATGACTATCAGAAGAGAAAGGCATTCAATACTGTTGGATGGATCTTCCAAGTTTGTACTCACGTATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGAGATGTTCCTTGGGGGTAA 258 0.4109 MDGIPIGRKIDLSAHSSYETLAQTLEDMFDESTTNVTCKGSNGEDHNMTIRRERHSILLDGSSKFVLTYEDKEGDWMLVGDVPWG 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme119130g00001 85 ProSiteProfiles PB1 domain profile. 1 85 IPR000270 GO:0005515
Trme119130g00001 85 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 84 IPR003311 GO:0005634|GO:0006355
Trme119130g00001 85 Pfam AUX/IAA family 1 84 IPR033389 -
Trme119130g00001 85 SUPERFAMILY CAD & PB1 domains 1 84 - -
Trme119130g00001 85 Gene3D - 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme119130g00001 Trme-Chr119130 53 581 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme119130g00001 1 84 B3 DNA Binding Superfamily AT1G59750 35.714 9.81e-09 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trme119130g00001 AUX_IAA 2.6e-31 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme119130g00001 K14484 - gmx:100779400 155.606