Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme119130g00001 | ATGGATGGAATACCGATTGGAAGAAAAATTGATTTGAGTGCTCACAGTTCCTATGAAACATTGGCACAAACATTGGAGGACATGTTTGACGAATCAACTACAAATGTCACTTGCAAAGGATCAAATGGGGAGGACCACAACATGACTATCAGAAGAGAAAGGCATTCAATACTGTTGGATGGATCTTCCAAGTTTGTACTCACGTATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGAGATGTTCCTTGGGGGTAA | 258 | 0.4109 | MDGIPIGRKIDLSAHSSYETLAQTLEDMFDESTTNVTCKGSNGEDHNMTIRRERHSILLDGSSKFVLTYEDKEGDWMLVGDVPWG | 85 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme119130g00001 | 85 | ProSiteProfiles | PB1 domain profile. | 1 | 85 | IPR000270 | GO:0005515 | |
| Trme119130g00001 | 85 | PANTHER | AUXIN-RESPONSIVE PROTEIN IAA17 | 1 | 84 | IPR003311 | GO:0005634|GO:0006355 | |
| Trme119130g00001 | 85 | Pfam | AUX/IAA family | 1 | 84 | IPR033389 | - | |
| Trme119130g00001 | 85 | SUPERFAMILY | CAD & PB1 domains | 1 | 84 | - | - | |
| Trme119130g00001 | 85 | Gene3D | - | 1 | 85 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme119130g00001 | Trme-Chr119130 | 53 | 581 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme119130g00001 | 1 | 84 | B3 DNA Binding Superfamily | AT1G59750 | 35.714 | 9.81e-09 | 48.5 |
Transcription factors information