LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme119049g00001	AGGTTAGCTTGCAGTGAGGTGCGTGAATTTGATTTCAGAGAGGGCTATTCTAGAAATGTAGATTATACAGAGTTTTTCAATAGTTCGAATGAAATGCTGCTTCATTTGCGACTGGACGAGTTTCTTTCTTTAAAACCAGTACACCCTTCAAATCAAACCTTTGAGGGTGATATGGAGAAAAGAAACTTAATTCTTAAGCTTATTTCACTGAGAGAGGAAGAAGATTATTCAATCAAGGAAGAGCGGGCAGTAGAGATGGATATATCACGACACAAGGTGAAGAAGCATCTGTTTCACAGGCAGGTTAAAGAGAAACTGTACTCATGGCTTCTTCACAAGGTAACTGAGAGTGGTAAAGGGCCAAACGTGTTAGATAAGGATGGGCAGGGCGTGCTACATTTAGCAGCTGTTCTTGGTTATGACTGGGCAATAACCCCAATTTTAACTGCTGGAGTTAATATCAACTTCCGTGATGTGAATGGATGGACGGCTTTACATTGGGCAGCATCTTGTGGCAGGTTAGGGTACTAG	531	0.4162	RLACSEVREFDFREGYSRNVDYTEFFNSSNEMLLHLRLDEFLSLKPVHPSNQTFEGDMEKRNLILKLISLREEEDYSIKEERAVEMDISRHKVKKHLFHRQVKEKLYSWLLHKVTESGKGPNVLDKDGQGVLHLAAVLGYDWAITPILTAGVNINFRDVNGWTALHWAASCGRLGY	176

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme119049g00001	176	ProSiteProfiles	Ankyrin repeat profile.	127	159	IPR002110	GO:0005515
	Trme119049g00001	176	SUPERFAMILY	Ankyrin repeat	106	174	IPR036770	-
	Trme119049g00001	176	Gene3D	-	60	175	IPR036770	-
	Trme119049g00001	176	PANTHER	CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA	1	173	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme119049g00001	Trme-Chr119049	1	531	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme119049g00001	1	173	CAMTA Transcription Factor Family	AT5G64220	51.149	3.38e-54	182

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme119049g00001	K21596		-	gmx:100818124	303.523

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