Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme119049g00001 AGGTTAGCTTGCAGTGAGGTGCGTGAATTTGATTTCAGAGAGGGCTATTCTAGAAATGTAGATTATACAGAGTTTTTCAATAGTTCGAATGAAATGCTGCTTCATTTGCGACTGGACGAGTTTCTTTCTTTAAAACCAGTACACCCTTCAAATCAAACCTTTGAGGGTGATATGGAGAAAAGAAACTTAATTCTTAAGCTTATTTCACTGAGAGAGGAAGAAGATTATTCAATCAAGGAAGAGCGGGCAGTAGAGATGGATATATCACGACACAAGGTGAAGAAGCATCTGTTTCACAGGCAGGTTAAAGAGAAACTGTACTCATGGCTTCTTCACAAGGTAACTGAGAGTGGTAAAGGGCCAAACGTGTTAGATAAGGATGGGCAGGGCGTGCTACATTTAGCAGCTGTTCTTGGTTATGACTGGGCAATAACCCCAATTTTAACTGCTGGAGTTAATATCAACTTCCGTGATGTGAATGGATGGACGGCTTTACATTGGGCAGCATCTTGTGGCAGGTTAGGGTACTAG 531 0.4162 RLACSEVREFDFREGYSRNVDYTEFFNSSNEMLLHLRLDEFLSLKPVHPSNQTFEGDMEKRNLILKLISLREEEDYSIKEERAVEMDISRHKVKKHLFHRQVKEKLYSWLLHKVTESGKGPNVLDKDGQGVLHLAAVLGYDWAITPILTAGVNINFRDVNGWTALHWAASCGRLGY 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme119049g00001 176 ProSiteProfiles Ankyrin repeat profile. 127 159 IPR002110 GO:0005515
Trme119049g00001 176 SUPERFAMILY Ankyrin repeat 106 174 IPR036770 -
Trme119049g00001 176 Gene3D - 60 175 IPR036770 -
Trme119049g00001 176 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme119049g00001 Trme-Chr119049 1 531 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme119049g00001 1 173 CAMTA Transcription Factor Family AT5G64220 51.149 3.38e-54 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme119049g00001 K21596 - gmx:100818124 303.523