Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11898g00001 ACCACCACTAGTCAAGCAAGAACGGCATTGACTATGTTGAGAGAAAACAAAGACAAGTTTGACTTGGTTATCAGTGACGTGCACATGCCTGACATGGATGGATTTAAGCTGCTTGAACTTGTGGGACTTGAGATGGACCTTCCTGTCATAATGTTGTCTGCATATGGTGATACAAAGCTGGTGATGAAGGGAATTTCCCATGGTGCCTGTGATTATCTGCTGAAACCTGTGAGATTAGAGGAGCTAAAGAACATATGGCAGCATGTAATTAGGAAGAAGAAGTCTGATCCAAAGGAGAAAAACAAAACCAGCAAACTAGACAAAACTACTTCTGATAGTGGCAGTGGACTAAGATCAGCAGGAGCAGAAAATTCAGATGAAAATGGAAAGCTGACGAAGAAAAGAAAGGATCAGGATGAAGATGAAGATGAGGATAAAGAGAATGGTAACGACAATGAGGACCCATCAGCCCAGAAGAAGCCCCGGGTTGTTTGGTCTGTGGATCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGCTAGGCATTGACAAGGCTGTACCCAAAAAAATTCTTGATATGATGAATGTCGAAAACATTACAAGGGAGAATGTGGCGAGTCATCTCCAGGCATTTTTCTAG 639 0.4272 TTTSQARTALTMLRENKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSAYGDTKLVMKGISHGACDYLLKPVRLEELKNIWQHVIRKKKSDPKEKNKTSKLDKTTSDSGSGLRSAGAENSDENGKLTKKRKDQDEDEDEDKENGNDNEDPSAQKKPRVVWSVDLHRKFVAAVNQLGIDKAVPKKILDMMNVENITRENVASHLQAFF 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11898g00001 212 Gene3D - 1 111 - -
Trme11898g00001 212 MobiDBLite consensus disorder prediction 108 126 - -
Trme11898g00001 212 PIRSF RR_ARR_type-B 1 211 IPR017053 GO:0003677|GO:0003700|GO:0009736
Trme11898g00001 212 MobiDBLite consensus disorder prediction 93 107 - -
Trme11898g00001 212 Pfam Response regulator receiver domain 2 84 IPR001789 GO:0000160
Trme11898g00001 212 Gene3D - 156 211 - -
Trme11898g00001 212 SUPERFAMILY Homeodomain-like 158 212 IPR009057 -
Trme11898g00001 212 MobiDBLite consensus disorder prediction 93 162 - -
Trme11898g00001 212 FunFam Two-component response regulator 156 211 - -
Trme11898g00001 212 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 157 212 IPR017930 -
Trme11898g00001 212 NCBIfam myb-like DNA-binding domain, SHAQKYF class 160 212 IPR006447 GO:0003677
Trme11898g00001 212 ProSiteProfiles Response regulatory domain profile. 1 90 IPR001789 GO:0000160
Trme11898g00001 212 MobiDBLite consensus disorder prediction 127 141 - -
Trme11898g00001 212 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 206 IPR045279 GO:0009736
Trme11898g00001 212 SMART REC_2 1 86 IPR001789 GO:0000160
Trme11898g00001 212 SUPERFAMILY CheY-like 3 96 IPR011006 -
Trme11898g00001 212 CDD REC_typeB_ARR-like 1 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11898g00001 Trme-Chr11898 342 1380 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11898g00001 1 211 Response Regulator Gene Family AT2G25180 66.509 2.77e-85 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trme11898g00001 Response_reg 3.6e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11898g00001 K14491 - gmx:100793913 348.977