Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1188490g00001 ATGCGAGACCCAAATGGAGTCAGCAGAGGATCTGGATTTGTTGCATTTTCAACTCCAGAGGAAGCATCAAGAGCTCTTGGAGAGATGAATGGCAAAATGATTGTCAGCAAACCTCTTTATGTTGCTGTTGCACAGAGA 138 0.442 MRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQR 46
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1188490g00001 46 Gene3D - 1 46 IPR012677 -
Trme1188490g00001 46 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1 39 IPR000504 GO:0003723
Trme1188490g00001 46 SUPERFAMILY RNA-binding domain, RBD 1 45 IPR035979 GO:0003676
Trme1188490g00001 46 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 46 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1188490g00001 Trme-Chr1188490 1 138 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1188490g00001 1 46 Eukaryotic Initiation Factors Gene Family AT1G49760 86.957 5.77e-23 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1188490g00001 K13126 - dcr:108223157 89.7373