Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1188269g00001 GGTGAAAAAGGAGTTAAAATTGGAGACTTTGGTTGTGCTAAGATGGTCGATGAAATTGCGCCGATCGCCGGAACTCCATTGTATATGGCGCCGGAGGTGGCGCGCGGTGAAGAACAAGGGTACCCTAGTGATGTTTGGTCACTTGGATGTACAATTGTTGAAATGGCAACTGGGTTTTCACCTTGGACCAATGTGGATGATCCTGTTCATGTT 213 0.4742 GEKGVKIGDFGCAKMVDEIAPIAGTPLYMAPEVARGEEQGYPSDVWSLGCTIVEMATGFSPWTNVDDPVHV 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1188269g00001 71 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 5 67 - -
Trme1188269g00001 71 ProSiteProfiles Protein kinase domain profile. 1 71 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1188269g00001 71 SUPERFAMILY Protein kinase-like (PK-like) 5 66 IPR011009 -
Trme1188269g00001 71 Gene3D Transferase(Phosphotransferase) domain 1 1 70 - -
Trme1188269g00001 71 Pfam Protein kinase domain 4 65 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1188269g00001 Trme-Chr1188269 1 213 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1188269g00001 2 69 MAP Kinase Kinase Kinase AT4G26890 62.319 8.20e-25 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trme1188269g00001 Pkinase 2.4e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1188269g00001 K20716 - han:110929456 118.627