Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11878g00001 ATGAGACAGGCAAAGAATAAGGTGGCTGCAAGTTTTGCTGCAGAAGGATCAATGATGAACAAGTTGAAGGCGTGGAATGATATGTATGGAGAAGGAGGTTCAAGGAAGAATGAAGCGCATAAGCAGCTCAGCCTAATGCAAGACATTCACTTCATCTATGCAAATGAAGCTGGAGCAAGTTTCATCGATGTCTCTTCATCTACCATCGTTAACTATTGGTTCGGACAATCTGAAAAGAACGTCCGGGCTTTGTTTTCACTAGCGGCAAAGGTTGCCCCAACTGTTATTTTCGTTGATGAAAATGATAGCATACTTGGGCAGCGSGGGTCTAACTATGAATGCAACGCAATGAGAAGGATTAAAAATGAATTCATGTCCCATTGGGATGGACTATTGTCAAAACCTGATGCGAGAGTTATTGTTCTTGGTGCCACCAACATGCCATTTGACCTTGATGAAGCAGTTATACGACGTTTCCAGCGCAGGATCATGGTTGGTCTTCCGTCTGCTGAGAACAGGGAAACAATCGTGAAAACTATATTAGCTGAGGAAAACCATGACGATATAGACTTCAAAGAGCTCTCAACTATGACAGAAGGATATAGTGGAAGTGATCTTAAGGTT 624 0.4247 MRQAKNKVAASFAAEGSMMNKLKAWNDMYGEGGSRKNEAHKQLSLMQDIHFIYANEAGASFIDVSSSTIVNYWFGQSEKNVRALFSLAAKVAPTVIFVDENDSILGQRGSNYECNAMRRIKNEFMSHWDGLLSKPDARVIVLGATNMPFDLDEAVIRRFQRRIMVGLPSAENRETIVKTILAEENHDDIDFKELSTMTEGYSGSDLKV 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11878g00001 208 ProSitePatterns AAA-protein family signature. 139 158 IPR003960 GO:0005524|GO:0016887
Trme11878g00001 208 Gene3D - 53 167 IPR027417 -
Trme11878g00001 208 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 37 - -
Trme11878g00001 208 Pfam ATPase family associated with various cellular activities (AAA) 54 166 IPR003959 GO:0005524|GO:0016887
Trme11878g00001 208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 207 IPR027417 -
Trme11878g00001 208 Gene3D - 168 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11878g00001 Trme-Chr11878 1 1606 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11878g00001 54 208 Calmodulin-binding Proteins AT3G56690 37.736 7.17e-25 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11878g00001 - - tpra:123913080 260.766