Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme118789g00001 ATGGATGATCAACTACTTGACGCAATATGTGAGCGGTTGGTATCATCCTTGAGCACTCAAGGMACATACATTGTCAGAGAAGGAGATCCAGTTACCGAGATGCTTTTTATCATCAGAGGGAGGCTTGAAAGTTCAACCACAAATGGTGGAAGAACTGGTTTCTTTAACTCTATAACCTTGAGGCCTGGTGATTTCTGTGGAGAAGAGTTACTTGCTTGGGCATTGCTTCCAAAA 234 0.4274 MDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPK 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme118789g00001 78 Pfam Cyclic nucleotide-binding domain 20 69 IPR000595 -
Trme118789g00001 78 Gene3D Jelly Rolls 1 78 IPR014710 -
Trme118789g00001 78 ProSiteProfiles cAMP/cGMP binding motif profile. 1 78 IPR000595 -
Trme118789g00001 78 CDD CAP_ED 1 71 IPR000595 -
Trme118789g00001 78 SUPERFAMILY cAMP-binding domain-like 1 73 IPR018490 -
Trme118789g00001 78 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme118789g00001 Trme-Chr118789 1 234 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme118789g00001 1 78 Ion Channels AT2G24610 96.154 2.16e-49 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme118789g00001 K05391 - pvy:116134863 159.844