Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme118745g00001 ATGAAACCCACAAAGAAGAAGGCTAAGCCAGGGGAGAGTACTCGACCGCGACCAAAAGATCGGCAGCAGATCCAAGACTGTATTAAAGAGTTGAGAGGAATCATCCCTCATGGCGGAAAGTGTAGCATTGATTCTTTGTTAGACCGCACGATCAGATACATGCTTTTCTTACGCGGCATCATTAAATATGCAGACATACTACAAGAGCCTAATGAGCCTAAGCTTATTGACCAAGAAAATGAAGTGATTCCAAAAGACAAAAATCATGGTGCTACATGGGCATTTGAAGTAGCAAATCAAACAATG 306 0.4216 MKPTKKKAKPGESTRPRPKDRQQIQDCIKELRGIIPHGGKCSIDSLLDRTIRYMLFLRGIIKYADILQEPNEPKLIDQENEVIPKDKNHGATWAFEVANQTM 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme118745g00001 102 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 8 57 IPR011598 GO:0046983
Trme118745g00001 102 MobiDBLite consensus disorder prediction 1 23 - -
Trme118745g00001 102 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 63 IPR036638 GO:0046983
Trme118745g00001 102 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 2 102 IPR043561 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme118745g00001 Trme-Chr118745 55 560 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme118745g00001 5 102 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 54.082 4.15e-31 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme118745g00001 - - cam:101509177 186.808