Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme118680g00001 ACCCAACCAGTCTTGAAATGTCCTCGCTGTGAATCTATCAACACAAAATTCTGCTACTATAACAACTACAACCTCTCTCAGCCACGTCACTTCTGCAAAAACTGTCGTCGTTACTGGACTAAAGGCGGTGTCCTCCGTAACGTCCCCGTCGGTGGCGGTTGTCGTAAATCTAAACGCTCNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNAAATCAAACTCTCACTCAAGCAGTGAGAGTTCTAGCCTCACCGCCGCGGCGGTGACGGAGACTGTTTCAGAACAAAAACCGCTAAACTCTAACACGAAAATCAACACTGGTTTGGAGAATGATTCACTTGAACAAGGTTCAGGTGATTGCGGTATTTTCTCAGAGATCGCGAATTTTACAAGCTTGATCACTTCTTCCTCTAACGAGACATTGCCGTTTGGATTCGGTAACTGTAACGGTAACGGTAACGGTAACGTTAACTGTCTGACCGATGCGTCGTCGTTTCAGTGGCAAAACCAAAAAGTGATGGATCAACAGAATCATCATGGAGATGCATTGAAGTTGTTACCGGAGAATATTGGTTCTGGATCGTTGATGGACCAC 630 0.4079 TQPVLKCPRCESINTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSXXXXXXXXXXXXXXXXXXXXXXKSNSHSSSESSSLTAAAVTETVSEQKPLNSNTKINTGLENDSLEQGSGDCGIFSEIANFTSLITSSSNETLPFGFGNCNGNGNGNVNCLTDASSFQWQNQKVMDQQNHHGDALKLLPENIGSGSLMDH 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme118680g00001 210 MobiDBLite consensus disorder prediction 82 122 - -
Trme118680g00001 210 MobiDBLite consensus disorder prediction 78 122 - -
Trme118680g00001 210 Pfam Dof domain, zinc finger 4 59 IPR003851 GO:0003677|GO:0006355
Trme118680g00001 210 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 3 174 IPR045174 GO:0003700|GO:0006355
Trme118680g00001 210 ProSiteProfiles Zinc finger Dof-type profile. 5 59 IPR003851 GO:0003677|GO:0006355
Trme118680g00001 210 Coils Coil 83 85 - -
Trme118680g00001 210 ProSitePatterns Zinc finger Dof-type signature. 7 43 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme118680g00001 Trme-Chr118680 1 630 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme118680g00001 5 158 C2C2-Dof Transcription Factor Family AT5G60850 46.552 1.47e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trme118680g00001 zf-Dof 1.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme118680g00001 - - mtr:25493917 258.07