Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme118666g00001 ATGACAAAAATTGACATAGTCAATTCATTGATCAAGAAGCTTCTCAATAAAGTTAAGGCGAACACCATATCACATGACGATTTCACCAACCAAGGCTGCCGATTTCCATCGTGGGTTAGCCCAAGAGTGGAAAAGCTGCTGATGATAACGAATGCAAAACAAAGTTATGATGTGGTTGTTGTTGTCGGTGGTTCCGGCAACTTTACCAATGTAATGGATGCTGTGAATTCGGCCCCCGACTCTAGCAGGAATTGCTATATCATATTTGTAAAGAAGGGCATTTACACAGAGAATGTTGAGATTAATAGGGCAAACATCGTAATCGTTGGAGAGGGTATGGATGCAACAATTATCACCAGTAGCTTGAGTTCGGCCAAAAATGGTTTGACCACATACAAGACAGCAACTTTTGGTAAGGACACACAAACCCCTTTTCTACCGCTGTTAAAGGATTCAGATTCATAG 465 0.4129 MTKIDIVNSLIKKLLNKVKANTISHDDFTNQGCRFPSWVSPRVEKLLMITNAKQSYDVVVVVGGSGNFTNVMDAVNSAPDSSRNCYIIFVKKGIYTENVEINRANIVIVGEGMDATIITSSLSSAKNGLTTYKTATFGKDTQTPFLPLLKDSDS 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme118666g00001 154 Pfam Pectinesterase 57 140 IPR000070 GO:0030599|GO:0042545
Trme118666g00001 154 PANTHER PECTINESTERASE 11 140 - -
Trme118666g00001 154 SUPERFAMILY Pectin lyase-like 56 137 IPR011050 -
Trme118666g00001 154 Gene3D - 51 143 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme118666g00001 Trme-Chr118666 36 500 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme118666g00001 17 137 Carbohydrate Esterase AT3G43270 46.341 8.59e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme118666g00001 K01051 - gmx:100798620 111.309