Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme118621g00001 TATTCTGGTGGAGGAAATGATGACGCAAATGGACCGGAGGCCAAAAGATGGAAGGGTGATAATGAAAATGATGTCTATTCTGCCTCGGCTAGTAGAACTGTTAAAGAACCTAGAGTTGTAGTTCAAACTACAAGCGAAATCGATATACTTGATGATGGCTTTAGGTGGAGGAAATATGGACAGAAAGTTGTTAAAGGAAATCCAAATGCAAGCCACAATTGTTGTTATGATGTCCTTACGGACACATCTAAAACTGTTGTATTGTGGCTTCAATTGAGATTGCGGAATGCAATTTAG 297 0.3939 YSGGGNDDANGPEAKRWKGDNENDVYSASASRTVKEPRVVVQTTSEIDILDDGFRWRKYGQKVVKGNPNASHNCCYDVLTDTSKTVVLWLQLRLRNAI 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme118621g00001 98 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 10 69 IPR044810 GO:0003700
Trme118621g00001 98 Pfam WRKY DNA -binding domain 51 71 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme118621g00001 98 ProSiteProfiles WRKY domain profile. 45 69 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme118621g00001 98 SMART WRKY_cls 50 91 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme118621g00001 98 MobiDBLite consensus disorder prediction 1 34 - -
Trme118621g00001 98 Gene3D WRKY domain 37 86 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme118621g00001 98 SUPERFAMILY WRKY DNA-binding domain 42 71 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme118621g00001 Trme-Chr118621 1 516 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme118621g00001 12 69 WRKY Transcription Factor Family AT2G38470 77.586 2.80e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trme118621g00001 WRKY 1.1e-06 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme118621g00001 K13424 - mnt:21397160 123.25