Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11842g00001 GGAAAACTACAAGACAATCAGGATATAGCAGTTAAAAGACTTTCTAAATCATCTGGACAGGGTCTAGAAGAATTCAAGAATGAAGTAGTTGTGATTTGTAAGCTTCAACACCGCAATCTTATAAGACTTCTTGGCTGCTGTGTTGAAGGAGAGGAAAAGATGTTGATATATGAGTACATGCCAAACAAAAGTTTGGATGCATTTGTCTTTGATCCATCAAAAAATAAACTCCTAAATTGGAGGACCCGGTATAGCATTATAGAAGGAATAGCTCGAGGAATGCTTTATCTTCATAGAGATTCCAAATTGAGAATTATACATAGAGATTTGAAGACAAGTAACATCTTGTTAGACGAGGAGCTTAATCCAAAAATATCAGACTTTGGTATGGCTAGAATATTTGGAGGGAGAGAAGATAAGGCCAATACTATCAGGGTTGTCGGAACATATGGTTATATGTCCCCTGAATATGCAATGCAAGGACTGTTTTCGGAGAAATCAGATGTCTTTAGCTTTGGTGTTTTGATACTAGAGATTATTAGTGGGAGAAGAAACTCAAGCTTTTATGACAATGAGCATGCACTGACCCTTCTAGGATTTGTATGGATACAATGGAGGGAAGGAAATATTTTATCTTTAGTAGATCCAGAAATATATGATCTTAGTCACCATAAGTATATTTCAAGGTGTATACACATAGGACTTCTGTGTGTACAAGAGCTTGCCGTAGACAGGCCCACTATGGCTGCAGTAATTTCTATGCTTAACAGTGAGGCTGAATTACTTCCTCCTCCAAGTCAACCTGCATTTATCTTGAGGCAAAATATGTTGAGTTCAATGTCTCGGGAAGAAAGTCATAGACCCTATTCCATCAATACTGTTAGTATTACAGACATCAGTGGCAGATAG 909 0.3751 GKLQDNQDIAVKRLSKSSGQGLEEFKNEVVVICKLQHRNLIRLLGCCVEGEEKMLIYEYMPNKSLDAFVFDPSKNKLLNWRTRYSIIEGIARGMLYLHRDSKLRIIHRDLKTSNILLDEELNPKISDFGMARIFGGREDKANTIRVVGTYGYMSPEYAMQGLFSEKSDVFSFGVLILEIISGRRNSSFYDNEHALTLLGFVWIQWREGNILSLVDPEIYDLSHHKYISRCIHIGLLCVQELAVDRPTMAAVISMLNSEAELLPPPSQPAFILRQNMLSSMSREESHRPYSINTVSITDISGR 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11842g00001 302 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 60 263 - -
Trme11842g00001 302 Pfam Protein tyrosine and serine/threonine kinase 4 253 IPR001245 GO:0004672|GO:0006468
Trme11842g00001 302 PIRSF ILK 4 201 - -
Trme11842g00001 302 PIRSF ILK 215 261 - -
Trme11842g00001 302 SUPERFAMILY Protein kinase-like (PK-like) 4 294 IPR011009 -
Trme11842g00001 302 ProSiteProfiles Protein kinase domain profile. 1 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme11842g00001 302 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 279 - -
Trme11842g00001 302 Gene3D Transferase(Phosphotransferase) domain 1 60 262 - -
Trme11842g00001 302 ProSitePatterns Serine/Threonine protein kinases active-site signature. 105 117 IPR008271 GO:0004672|GO:0006468
Trme11842g00001 302 FunFam Uncharacterized protein 1 59 - -
Trme11842g00001 302 Gene3D Phosphorylase Kinase; domain 1 1 59 - -
Trme11842g00001 302 SMART serkin_6 2 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11842g00001 Trme-Chr11842 64 1381 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11842g00001 1 302 Receptor kinase-like Gene Family AT4G11530 57.468 2.09e-120 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme11842g00001 PK_Tyr_Ser-Thr 8.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11842g00001 - - tpra:123892366 597.816