Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1180359g00001 ATGGGGTATTTAGCACCTGAATATGTTTATTCGGGTGTTCCGACTGTGAAGACCGATGTGTATAGTTTCGGTGTCATGGTGATTGAAGTCGCGACCGGGAGGAGACCTGTTGGAGACGACGGAACTGTGGTCGGCGATTATGTTTGGAATTT 152 0.4803 MGYLAPEYVYSGVPTVKTDVYSFGVMVIEVATGRRPVGDDGTVVGDYVWN 50
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1180359g00001 50 Gene3D Transferase(Phosphotransferase) domain 1 1 50 - -
Trme1180359g00001 50 Pfam Protein tyrosine and serine/threonine kinase 3 37 IPR001245 GO:0004672|GO:0006468
Trme1180359g00001 50 SUPERFAMILY Protein kinase-like (PK-like) 2 40 IPR011009 -
Trme1180359g00001 50 ProSiteProfiles Protein kinase domain profile. 1 50 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1180359g00001 50 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1180359g00001 Trme-Chr1180359 8 159 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1180359g00001 1 50 Receptor kinase-like Gene Family AT5G42120 76.000 3.55e-23 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Trme1180359g00001 PK_Tyr_Ser-Thr 9.4e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1180359g00001 - - lang:109346768 87.0409