Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme117970g00001 ATGTTTTGTGCTCGCAAACCTGGTCTTTTGCTGTCAACCATGAAGGCTTTGGATAACCTTGGATTAGACATTCAGCAAGCTGTTATAAGCTGTTTCAATGGATTTGCTATGGATATATTTAGAGCCGAGCAAATCAAAGAAGGTCAAGATGTCCATCCAGAGGAAATCAAAGCAGTACTCTTGGATTCAGCTGGCTT 197 0.4112 MFCARKPGLLLSTMKALDNLGLDIQQAVISCFNGFAMDIFRAEQIKEGQDVHPEEIKAVLLDSAG 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme117970g00001 65 ProSiteProfiles ACT domain profile. 1 65 IPR002912 -
Trme117970g00001 65 CDD ACT_UUR-ACR-like 2 59 - -
Trme117970g00001 65 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme117970g00001 Trme-Chr117970 1 349 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme117970g00001 1 45 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 84.444 9.75e-23 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme117970g00001 - - gmx:100217341 125.176