Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme117933g00001 ATGACATGCTTGTTTCCCATTGAACAACAGCTGTGTGATTGTGTCTTCTCGGGGTTCTCCACCACTGGTTCTAATTGTTTCATTGAGGTTTGCCAATTAGCAACGTTTCAGCTGCTGAATTTGACAAATTCAGTTGGTTCTGGGAGCCCATCAAAATGCTGTTTGCTCAAAAAACTCGACATATTTAAGCCGTTACATAGTCTAATTCCGAAATTTGAATCTTTGTTTCCAGATTCGACATTACTGTACCAAGCCATCACAGTTAAGAATAGATTAGGAGAAGCTAGCAGAGACCTTTCCAAGGATATGCATAATTTTATTTTNNAAATCCCAGCAACAGATCTAGTTGATTCATCTTATGGCCAATGTCATCAAATGACTATCGAGGTCATGTGCTACGTGACTTCTGTTTGCAGGTCAAAGCGGACGCTGGAACAAATTTTACAAGAGTACTCCAAGGTTGACAATGAAGTGGAAGCATCTTCTTTCTTCGTGAAGCAGATAGAACAGATAATAGGGATGTTAGAAAAAAAATTGATATCCGAGTCCAAAAACTACAAAGACCTTGGTTTGTGCCATATTTTCATG 588 0.3878 MTCLFPIEQQLCDCVFSGFSTTGSNCFIEVCQLATFQLLNLTNSVGSGSPSKCCLLKKLDIFKPLHSLIPKFESLFPDSTLLYQAITVKNRLGEASRDLSKDMHNFIXXIPATDLVDSSYGQCHQMTIEVMCYVTSVCRSKRTLEQILQEYSKVDNEVEASSFFVKQIEQIIGMLEKKLISESKNYKDLGLCHIFM 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme117933g00001 196 PANTHER EXOCYST COMPLEX PROTEIN EXO70 2 196 IPR004140 GO:0000145|GO:0006887
Trme117933g00001 196 Gene3D Exocyst complex component Exo70 1 196 - -
Trme117933g00001 196 SUPERFAMILY Cullin repeat-like 2 196 IPR016159 -
Trme117933g00001 196 Pfam Exo70 exocyst complex subunit 4 196 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme117933g00001 Trme-Chr117933 22 609 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme117933g00001 4 196 EXO70 exocyst subunit family AT5G58430 40.816 1.07e-40 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme117933g00001 - K07195 mtr:112421859 176.407