Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme117850g00001 ATGGACCAAGATTCCAAGAAGAACAGGGTGAAGGATAAAAGCAACAAAACAGTACCCTTTTATAAGCTTTTCTCATTTGCAGACTCATGGGATTATTTGTTGATGTTTGTTGGGACGATAAGTGCTGTTGCGAATGGAGTCTCTATGCCTTTACTGACTATAATTATTGGAGATGCTATTGATGCTTTTGGAGGAAATGTTAACACTAAACAAGTAGTTCATCAAGTTTTCAAGGTGTCTCTCAGGTTTGCAATTATAGGCGCAGGCGCATTTTTTGCAGCGTTTCTGCAGGTGGATTGCTGGATGATCACCGGCGAGAGACAAGCTGCAAGAATAAGGGCCTTATACCTCAAAGCAATTTTAAGGCAA 369 0.4065 MDQDSKKNRVKDKSNKTVPFYKLFSFADSWDYLLMFVGTISAVANGVSMPLLTIIIGDAIDAFGGNVNTKQVVHQVFKVSLRFAIIGAGAFFAAFLQVDCWMITGERQAARIRALYLKAILRQ 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme117850g00001 123 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 36 123 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme117850g00001 123 Pfam ABC transporter transmembrane region 35 123 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme117850g00001 123 Gene3D ABC transporter type 1, transmembrane domain 13 123 IPR036640 GO:0005524|GO:0016020
Trme117850g00001 123 SUPERFAMILY ABC transporter transmembrane region 23 123 IPR036640 GO:0005524|GO:0016020
Trme117850g00001 123 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 7 123 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme117850g00001 Trme-Chr117850 1 564 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme117850g00001 16 123 Calmodulin-binding Proteins AT2G36910 37.615 2.72e-23 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme117850g00001 K05658 - gmx:100777713 195.282