Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme117847g00001 ATGGAAACACTGTTTTGGAAAGCGACGGTTGATAAACCTTTTTCAGTTGAATATGCAAATGATATGCCTGGTTCGGCATTTTCGATGTCGTCGACGAAATTTCGTCACGCCGGTGAGGCTGCTTCGGTTGCTCATAGTGCTTGGAATATGAGAGGGGTTTCAAGGGCAAAAGGGTCTTTGTTGAGGTTTATGAAGGAGGAGATTCCTGGGGTTACTTCACCTATGGTTTATCTTGCTATGCTTTTTAGTTGGTTTGCTTGGCATGTTGAAGATCATGATCTTCATAGCTTGAATTATCTTCATATGGGTGCTTCCAAGACTTGGTATGGTGTTCCTAGAGATGCTGCTGTTGCTTTTGAGGATGTTGTTAGGGTTCATGGCTATGGTGGAGAGATTAACCCTCTTGGTTAG 411 0.4331 METLFWKATVDKPFSVEYANDMPGSAFSMSSTKFRHAGEAASVAHSAWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYLAMLFSWFAWHVEDHDLHSLNYLHMGASKTWYGVPRDAAVAFEDVVRVHGYGGEINPLG 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme117847g00001 136 SUPERFAMILY Clavaminate synthase-like 56 129 - -
Trme117847g00001 136 Gene3D Cupin 1 133 - -
Trme117847g00001 136 ProSiteProfiles JmjC domain profile. 42 136 IPR003347 -
Trme117847g00001 136 SMART cupin_9 42 136 IPR003347 -
Trme117847g00001 136 Pfam JmjC domain, hydroxylase 75 126 IPR003347 -
Trme117847g00001 136 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme117847g00001 Trme-Chr117847 12 422 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme117847g00001 1 36 C2H2 Transcription Factor Family AT5G04240 58.333 8.99e-10 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trme117847g00001 JmjC 2.2e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme117847g00001 - - psat:127084261 265.003