Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme117750g00001 CCGTTTGAGTTGGAAGATCTTGTAGCTGCACTTAAGTCTGAAATCCCTAGTGTATTATTTGACAGCATTCATGTTTCTATTTTGCAAACTCTGAAAAAGCATTTGGAATTCCTTTCCAGTGAGGGTTGCCAATCTGCATCCATTTGCCTGAGGAATCTTAACTGGGATTTCTTGGACCTTGTCACATGGCCCATGTTCATGGCCGAGTACCTTCTGATTCACAGTTCACAGTTCAAAACTAGTTTTGATGCTAACCACTCAATGTTCGGAACTGACTACTACAAACAACCTGTCACTTTGAAGCTTGAGATTCTTCAGTACCTGTGCGATGATATGATTGAAGCAGACACCATAAGGTCAGAGCTTAACAGAAGATCTTTGGTAACAGAGTCTGGTATGGATTTTGATCAGAATATTTATTTCGACACTTGCAAGAAAAAAAGAGCTGTAACAGATCTTTCTGGTGGATCTTGCTTGACTGAGGAGATTGTGGATGACACAAC 503 0.4056 PFELEDLVAALKSEIPSVLFDSIHVSILQTLKKHLEFLSSEGCQSASICLRNLNWDFLDLVTWPMFMAEYLLIHSSQFKTSFDANHSMFGTDYYKQPVTLKLEILQYLCDDMIEADTIRSELNRRSLVTESGMDFDQNIYFDTCKKKRAVTDLSGGSCLTEEIVDDTT 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme117750g00001 168 PANTHER PHD FINGER FAMILY PROTEIN 1 162 - -
Trme117750g00001 168 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 91 123 IPR028942 -
Trme117750g00001 168 ProSiteProfiles DDT domain profile. 1 37 IPR018501 -
Trme117750g00001 168 Pfam DDT domain 1 33 IPR018501 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme117750g00001 1 165 PHD Transcription Factor Family AT5G12400 48.193 5.01e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Trme117750g00001 WHIM1 1.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme117750g00001 - - mtr:11438137 301.597