Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11774g00001 CTACGCGGTAAAGGAGGACCGCAAGACGAGCTCAGCGCGAACCATGTTCTCGCTGAGCGAAGACGAAGAGAGAAACTCAATGAGAGGTTCATCATTTTAAGATCGTTGGTTCCATTCGTTACGAAGATGGATAAAGCTTCTATATTAGGTGATACAATCGAGTACTTGAAACAGCTTCGGAGAAAGATTCAAGATCTCGAGACGCGTAACCGTCAGATAGAATCTGAGAGGAGTGGCGGAACCGTTGTGGTTGGTCCCACTGAGAAGAAAAAAGTGAGGATTGTGGAAGGGGGTAGTGGGGCTAATAGAGCGAAAGCGGTTGAGGTTGTTGAGAAGGAGGTTGTTGCGTCGGTTCAAGTTTCGATTATTGAGAGTGATGCTTTGTTGGAGATAGAATGTTTACACAGAGAAGGGTTGTTGTTGGATGTTATGCAGATGTTAAGGGAGTTGAGGATTGAGGTTATTGGGGTTCAGTCTTCGCTTAACAATGGTGTTTTTGTCGCGGAATTGAGGGCTAAGGTGAAGGAAAATGGAGGAAATGGGAAGAAAGTTAGTATTGTGGAAGTTAAGAGAGCACTTAACCAACTTATACCTCATAACATTTAG 606 0.4422 LRGKGGPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYLKQLRRKIQDLETRNRQIESERSGGTVVVGPTEKKKVRIVEGGSGANRAKAVEVVEKEVVASVQVSIIESDALLEIECLHREGLLLDVMQMLRELRIEVIGVQSSLNNGVFVAELRAKVKENGGNGKKVSIVEVKRALNQLIPHNI 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11774g00001 201 Gene3D - 10 79 IPR036638 GO:0046983
Trme11774g00001 201 Pfam Helix-loop-helix DNA-binding domain 13 60 IPR011598 GO:0046983
Trme11774g00001 201 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 10 59 IPR011598 GO:0046983
Trme11774g00001 201 PANTHER TRANSCRIPTION FACTOR TT8 5 199 - -
Trme11774g00001 201 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 12 77 IPR036638 GO:0046983
Trme11774g00001 201 Coils Coil 49 76 - -
Trme11774g00001 201 SMART finulus 16 65 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11774g00001 Trme-Chr11774 3 608 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11774g00001 7 200 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 45.876 2.00e-48 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trme11774g00001 HLH 2.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11774g00001 - - cam:101506726 290.041