Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme117708g00001 TCTGTTCCAGCATTCGCTCTATCAGAAGGAGTTGGACTTGGTCCCGGTTTGGTGTTGGAAATTGTGATGACCTTTGGATTGGTGTACACTGTGTACGCTACAGCCGTTGACCCAAAGAAGGGTAATATTGGAATTATTGCACCTATTGCCATTGGTTTCATCGTTGGTGCTAACATTTTGGTTGGTGGAGCTTTCACCGGAGCATCCATGAACCCAGCTGTGTCATTTGGGCCAGCTGTTGTGAGCTGGAGCTGGTCCAACCACTGGATCTACTGGGCCGGCCCACTTATCGGTGGTGGGCTTGCTGGAGTTATCTATGAAGTTCTTTTCATTAGC 336 0.4881 SVPAFALSEGVGLGPGLVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVVSWSWSNHWIYWAGPLIGGGLAGVIYEVLFIS 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme117708g00001 112 PANTHER AQUAPORIN-8 2 111 IPR034294 -
Trme117708g00001 112 PRINTS Major intrinsic protein family signature 19 37 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme117708g00001 112 PRINTS Major intrinsic protein family signature 89 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme117708g00001 112 PRINTS Major intrinsic protein family signature 52 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trme117708g00001 112 Gene3D Glycerol uptake facilitator protein. 1 112 IPR023271 -
Trme117708g00001 112 SUPERFAMILY Aquaporin-like 4 111 IPR023271 -
Trme117708g00001 112 Pfam Major intrinsic protein 6 106 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme117708g00001 Trme-Chr117708 298 633 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme117708g00001 1 112 Major Intrinsic Protein MIP AT2G36830 77.679 2.58e-58 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme117708g00001 K09873 - gmx:547967 179.874