Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11752g00001 TACAGGGCATTTGATGAGGTAAATGGAATTGAAGTTGCATGGGGACAGGTTCAGATTGATGAGTTGTTAAAGAGACCAGGTGACTTAGACAGGCTATACTCGGAAGTGCATCTTTTAAAATCGCTGAGGCACAATAACATATTGAGATTCTACAATTCTTGGGTTGATGACAAGCGAAAGACGGTTAATATGATTACTGAGCTGTTTACCTCGGGTAGCCTTAGACATTATATTTACACCTATGAAATCCTGGTAGGTACTCCGGAGTTTATGGCACCTGAAATGTATGATGAAAATTACAACGAATTAGCCGACATATATTCATTTGGTATGTGCATGCTTGAGTTGGGTATAATGCCTGTTGCACTTTCGAAAGTGATAGATCCAGATATAAAAGCATTTATTGAGAAATGTCTTGTTCCAGCATCCCAAAGATTGTCAGCAAAGGAGCTTCTGATGGACCCCTTTGTTCAAGTGAATGGTTCAGCAAAGAACATTTCTTTTCCGTTGCCAGATATTGTTCTTCCCAAATTGGGAGCCTCTGAAAACAGATGTATGTTGTCAGAAGGTCCTGCTGGTGCACATATTGAGGCCGTTTCTATGGATCTCTGTGACACTAACAAGCTGCCTGTGATCACTGTACTTGATAATTCCACTATTGATGTGTCATCTTCTCCAACTGTTGAGATAAGAAGGTTGAAGGGAGGTGATACCTACTTTCTAAAAGGTGATCAAAATGATGAGAATTCTGTATCATTAGTTCTGCGGATAGCTGATCAAAAGG 784 0.4005 YRAFDEVNGIEVAWGQVQIDELLKRPGDLDRLYSEVHLLKSLRHNNILRFYNSWVDDKRKTVNMITELFTSGSLRHYIYTYEILVGTPEFMAPEMYDENYNELADIYSFGMCMLELGIMPVALSKVIDPDIKAFIEKCLVPASQRLSAKELLMDPFVQVNGSAKNISFPLPDIVLPKLGASENRCMLSEGPAGAHIEAVSMDLCDTNKLPVITVLDNSTIDVSSSPTVEIRRLKGGDTYFLKGDQNDENSVSLVLRIADQK 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11752g00001 261 SMART serkin_6 1 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme11752g00001 261 ProSiteProfiles Protein kinase domain profile. 1 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme11752g00001 261 SUPERFAMILY Protein kinase-like (PK-like) 1 158 IPR011009 -
Trme11752g00001 261 Gene3D Transferase(Phosphotransferase) domain 1 79 172 - -
Trme11752g00001 261 FunFam Probable serine/threonine-protein kinase WNK1 1 67 - -
Trme11752g00001 261 Gene3D Phosphorylase Kinase; domain 1 1 67 - -
Trme11752g00001 261 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 84 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11752g00001 Trme-Chr11752 30 1473 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11752g00001 1 260 MAP Kinase Kinase Kinase AT3G18750 49.643 1.71e-82 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Trme11752g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11752g00001 K08867 - atr:18441581 248.054