Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1174g00001 ATGGATGTTGATGCTATCCTAAATGTGAAGTCAATGTATGAAATCAAGAGAAACTGGCAAGGAGATCCTTGTACTCCAGTGTCTTACTTGTGGAATGGTTTAAACTGCAGCTATGTTGGATCTAATTCACCAAGGATCATATACTTGAACTTAACTTCCAGCGGTTTAATCGGAACTATAGCTCCTGGCATATCCAATCTGAAGTCAATAGAATACTTGGATTTGTCGAATAACAGTTTGACCGGTGCTGTGCCTGATTTCCTATCTCAGCTGCGCTTCTTGAGAGTTCTGAATAAGGTTGTAGTTCCATTACTATCATCACTTGGTGGAGCTTTCATGATACTAGCAGTAATGGTGATTTCTTACCGCATATACTACAAGAGACACCAAGTTTATTCAAGAATAAAGCAAGAACTAGAGTCAAAGAAACAAGAATTCACCTTTGAAGAAGTATTAAACATTACCAGAAACTTTGAAAAGGTTGTTGGGAAAGGAGCATCTGGAACAGTCTATCATGGCTGGATTGATCATGATACTGAGGTAGCTGTCAAAATGTTATCTTCCTCATCAGCTCAAGGATATCTGCAATTTCAAGCAGAGGCCAAACTTTTTGCTGCAGTTCATCATAAATACTTTACTGGTCTTGTAGGGTACTGTGATGATGGCACCAACATGGCTCTCATCTATGAGTATATGGCTAATGGAGACTTGGCCAAGCATTTATCAG 727 0.392 MDVDAILNVKSMYEIKRNWQGDPCTPVSYLWNGLNCSYVGSNSPRIIYLNLTSSGLIGTIAPGISNLKSIEYLDLSNNSLTGAVPDFLSQLRFLRVLNKVVVPLLSSLGGAFMILAVMVISYRIYYKRHQVYSRIKQELESKKQEFTFEEVLNITRNFEKVVGKGASGTVYHGWIDHDTEVAVKMLSSSSAQGYLQFQAEAKLFAAVHHKYFTGLVGYCDDGTNMALIYEYMANGDLAKHLS 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1174g00001 242 Gene3D Phosphorylase Kinase; domain 1 137 231 - -
Trme1174g00001 242 SUPERFAMILY L domain-like 13 98 - -
Trme1174g00001 242 FunFam Leucine-rich repeat receptor-like kinase 1 108 - -
Trme1174g00001 242 Gene3D Ribonuclease Inhibitor 3 109 IPR032675 -
Trme1174g00001 242 ProSiteProfiles Protein kinase domain profile. 156 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1174g00001 242 Pfam Protein tyrosine and serine/threonine kinase 158 241 IPR001245 GO:0004672|GO:0006468
Trme1174g00001 242 ProSitePatterns Protein kinases ATP-binding region signature. 162 184 IPR017441 GO:0005524
Trme1174g00001 242 PANTHER OS07G0107800 PROTEIN-RELATED 2 239 - -
Trme1174g00001 242 SUPERFAMILY Protein kinase-like (PK-like) 129 241 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1174g00001 Trme-Chr1174 190 2021 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1174g00001 2 242 Receptor kinase-like Gene Family AT1G51880 41.356 8.75e-72 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trme1174g00001 PK_Tyr_Ser-Thr 8.5e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1174g00001 - - psat:127087401 409.453