Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme117223g00001 CAGGCAATTAAGGCAAGTGTTGTTCGTCAAATAACGGAGGCAAAGACGTTACTTTCTAGATCAGATGACAATTCTGAGGCATTAGCTTTGATCATTGATGGGAAATCTCTTGCTTATGCGCTAGAAGACGATGTAAAGAACTTGTTTCTTGAACTTGCAATTGGTTGCGCATCTGTTATATGCTGTCGTTCGTCTCCAAAGCAAAAAGCACTTGTTACTAGATTGGTTAAGATGAGACCTGGTAGTACAACTCTAGCTATTGGAGATGGTGCAAATGATGTTGGTATGCTCCAAGAAGCAGATATTGGAATCGGTATCAGTGGTGTCGAAGGAATGCAGGCAGTTATGTCAAGTGATATTGCCATTGCTCAATTTCGATATCTCGAACGCTTACTTCTTGTGCATGGACATTGGTGTTACAGAAGGATCTCATCTATGATATGTTACTTCTTTTACAAGAATATCACCTTCGGCTTCACTTTGTTCTTCTATGAGATGTATACCTCATTCTCAGGCCAAGCTGCATACAAT 531 0.403 QAIKASVVRQITEAKTLLSRSDDNSEALALIIDGKSLAYALEDDVKNLFLELAIGCASVICCRSSPKQKALVTRLVKMRPGSTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNITFGFTLFFYEMYTSFSGQAAYN 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme117223g00001 177 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 20 177 - -
Trme117223g00001 177 NCBIfam HAD-IC family P-type ATPase 53 170 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme117223g00001 177 Gene3D - 2 127 IPR023214 -
Trme117223g00001 177 Pfam Phospholipid-translocating P-type ATPase C-terminal 115 177 IPR032630 -
Trme117223g00001 177 SUPERFAMILY Calcium ATPase, transmembrane domain M 136 171 IPR023298 -
Trme117223g00001 177 SUPERFAMILY HAD-like 9 133 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme117223g00001 Trme-Chr117223 1 632 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme117223g00001 2 177 Primary Pumps ATPases AT1G26130 82.386 9.70e-97 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme117223g00001 K01530 - gmx:100796405 319.316