Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11717g00001 ATGTTATTCACAGGTACTGCTGGGCCATCTGCTACTTCAGCTTCAACATCGTTTCGATCTAGCATTGCTGCGTATGCAGGGTCTGCTAAGACTTTCAGTATGAATGAAATAGAGAAAGCAACTGATAATTTTCACCCTTCTAGAATACTTGGAGAAGGAGGTTTTGGGCTTGTTTATAGCGGTAACCTTGAAGATGGGTCAAAAGTAGCATTCAAAGTTCTAAAGAGGGAGGATCATCACGGCGATCGTGAATTCTTATCTGAAGTTGAGATGCTTAGCCGCCTTCACCATAGAAATTTGGTAAAGTTGATCGGTATATGTACAGAACTCAGCTTCCGCTGTCTGGTTTATGAACTCATTCCAAATGGCAGTGTGGAATCCCATTTACATGGAGTTGATAGGGAAAAAAGTCCACTTGATTGGAGTACTCGGATAAAGATAGCACTTGGTGCTGCTCGTGGTCTCGCTTATCTGCATGAAGATTCAAGTCCACATGTCATACATAGGGACTTCAAATCTAGCAATATCTTGCTGGAAAATGATTTTACGCCAAAAGTTTCTGATTTTGGATTGGCTCGAACGGCAGCTGATGAGGATAATAGGCACATATCGACACGTGTCATGGGAACTTTCGGTTATGTGGCTCCTGAGTATGCAATGACTGGACATCTTCTCGTGAAAAGTGATGTATACAGCTACGGTGTTGTTCTTCTTGAGCTTTTGACAGGAAGAAAACCCGTGGATTTCTCACAACCGCCTGGTCAAGAGAATCTCGTTGCATGGGCTCGTCCACTCCTCACAAGTAGAGAAGGTCTGGAAGCGTTAATCGATCCATCTCTAGGAACCAATATCCCTTTTGATAGTGTGGCTAAAGTTGCAGCCATTGCATCAATGTGTGTACAACCAGAGGTTTCGGACCGTCCTTTCATGGGTGAGGTTGTTCAGGCTTTGAAACTTGTTTGTAATGAATGTGATGAAGCAAAAGAAGCAGGTTCAACAAATTCTAGCCAGGAAGAGTTATCTTCTGATTTCATTACCGCTTCTGAACAACTACCAGATAGTTTCCGAGGCCATTTCGCAGCCGCTAATTACGATTATGGAATTGATATCGAAAATGGATTGGCAGCATCAGAGTTATTCAGCTCATCAGCAAGATTTGGAAGACAAGTATCT 1173 0.428 MLFTGTAGPSATSASTSFRSSIAAYAGSAKTFSMNEIEKATDNFHPSRILGEGGFGLVYSGNLEDGSKVAFKVLKREDHHGDREFLSEVEMLSRLHHRNLVKLIGICTELSFRCLVYELIPNGSVESHLHGVDREKSPLDWSTRIKIALGAARGLAYLHEDSSPHVIHRDFKSSNILLENDFTPKVSDFGLARTAADEDNRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDFSQPPGQENLVAWARPLLTSREGLEALIDPSLGTNIPFDSVAKVAAIASMCVQPEVSDRPFMGEVVQALKLVCNECDEAKEAGSTNSSQEELSSDFITASEQLPDSFRGHFAAANYDYGIDIENGLAASELFSSSARFGRQVS 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11717g00001 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Trme11717g00001 391 Gene3D Phosphorylase Kinase; domain 1 15 119 - -
Trme11717g00001 391 FunFam Receptor-like serine/threonine-protein kinase ALE2 120 339 - -
Trme11717g00001 391 Gene3D Transferase(Phosphotransferase) domain 1 120 344 - -
Trme11717g00001 391 CDD STKc_IRAK 50 318 - -
Trme11717g00001 391 PANTHER OS01G0750732 PROTEIN 10 343 - -
Trme11717g00001 391 FunFam receptor-like serine/threonine-protein kinase ALE2 17 119 - -
Trme11717g00001 391 ProSiteProfiles Protein kinase domain profile. 44 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme11717g00001 391 Pfam Protein tyrosine and serine/threonine kinase 47 317 IPR001245 GO:0004672|GO:0006468
Trme11717g00001 391 SUPERFAMILY Protein kinase-like (PK-like) 25 317 IPR011009 -
Trme11717g00001 391 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11717g00001 Trme-Chr11717 1 1610 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11717g00001 22 389 Receptor kinase-like Gene Family AT5G56890 73.656 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Trme11717g00001 PK_Tyr_Ser-Thr 3.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11717g00001 - - psat:127136544 704.901