Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11707g00001 GAGATACCCAGTGCTCATCGCATTATCATTAGTGGCACACCATTGCAAAATAATCTCAAGGAATTGTGGGCATTGTTCAATTTCTGCTGCCCTGAGTTGCTTGGTGACAAAAAATGGTTCAAAGATAAATATGAAACACCTATACTTCGTGGAAATGATAAAAATGCTTCTGACAGAGACAAGCGTGTTGGTTCAGCTATAGCAAAGGAGCTAAGGGATCATATTCAGCCGTACTTTTTGAGACGTTTAAAGAGTGAAGTTTTCAATCAAGATACGGAAAAAACAACAGCAAAGCTTTCTCAGAAACGAGAAATCATTGTGTGGCTTCGGTTGACCAATATTCAGCGGCATCTTTATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGC 392 0.3929 EIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDKKWFKDKYETPILRGNDKNASDRDKRVGSAIAKELRDHIQPYFLRRLKSEVFNQDTEKTTAKLSQKREIIVWLRLTNIQRHLYEAFLKSEIVLSA 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11707g00001 131 PANTHER SNF2/RAD54 FAMILY MEMBER 1 130 - -
Trme11707g00001 131 Gene3D - 1 81 IPR038718 -
Trme11707g00001 131 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 82 IPR027417 -
Trme11707g00001 131 Pfam SNF2-related domain 4 125 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11707g00001 Trme-Chr11707 1 1639 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11707g00001 7 124 RAD5 or RAD16-like Gene Family AT5G22750 24.576 3.53e-06 43.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme11707g00001 SNF2_N 4.3e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11707g00001 K20093 - gmx:100779283 243.047