Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme117040g00001 CAAGCAGGAATTGGTATTGGTACTCAAAACTCATCATTACCTCTGCAGCAGCCATCAGCTTCAACGGTGACTGTTACCGTTGCAGCTGATGGCAGCTACCAAGGGTCTATAAGACAAAGATCAATGACCGATCAAGCTAAGATGTCCAAGATACACCAAAATGATGTTGCTGCAACACAAAAATGTCCAAGATGTGAATCAACAAACACAAAGTTTTGCTACTACAACAACTACAATCTTTCACAACCACGCCATTTTTGCAAAACTTGTCGTCGTTATTGGACTAGAGGAGGTGCACTTAGAAATGTTCCTGTTGGAGGTGGTTGTAGAAGGAATAATAAAAGAAGCAAAGGAAATTCAATATCAAAATCAACTTCAAAACCTAATCGTAATGATCATCGCTTGGTGGGTACTGGTGGTGGCGGTGGTGGTTCTAGCTCAGCAAGTGCAAATTCTTCTTCTAATAATGGTTGCACTAATTCTAATGTGAATGTGGGGATCTCTCATTTTCCTAC 515 0.4078 QAGIGIGTQNSSLPLQQPSASTVTVTVAADGSYQGSIRQRSMTDQAKMSKIHQNDVAATQKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKRSKGNSISKSTSKPNRNDHRLVGTGGGGGGSSSASANSSSNNGCTNSNVNVGISHFPT 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme117040g00001 172 MobiDBLite consensus disorder prediction 142 156 - -
Trme117040g00001 172 Pfam Dof domain, zinc finger 59 114 IPR003851 GO:0003677|GO:0006355
Trme117040g00001 172 MobiDBLite consensus disorder prediction 104 156 - -
Trme117040g00001 172 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 47 153 IPR045174 GO:0003700|GO:0006355
Trme117040g00001 172 ProSitePatterns Zinc finger Dof-type signature. 62 98 IPR003851 GO:0003677|GO:0006355
Trme117040g00001 172 ProSiteProfiles Zinc finger Dof-type profile. 60 114 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme117040g00001 Trme-Chr117040 121 635 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme117040g00001 37 117 C2C2-Dof Transcription Factor Family AT2G37590 71.605 3.91e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trme117040g00001 zf-Dof 5.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme117040g00001 - - cam:101502096 233.802