Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme116g00001 ATCTCTGAGTTAGTATGTAAAGCAAAAGAACTTGAAGAAACACTTAATCTTCAAGATGCAGAGCAGACTCTTGATAGTAGGTGTTCTTGTTTGAAGCCTGTTAGGAATGCAGATGATATACACAATAACACAAGGAAGGCAGCTTCTCGTGAAGATTCCAGTGACAACTTCTTATATTGTCCCAGGGCTGTAGATCTACACAAAGAGGATTTTAAACATTTTCAATGGCACTGGAGCAAAGCGGAGCCTGTAATTGTCAGCAATGTACTTGAATCTACATCTGGTTTAAGCTGGGAACCGCTTGTCATGTGGCGTGCATTCCGTCAGATAAGAAATACCAAGCACAAAACGCTTTTGGATGTGAAGGCAATTGATTGCTTAGATTGGTGCGAGGGAGATATTAATGTGAACCAATTTTTTACTGGGTACACAAAAGGCCGCTCGGATTGGCTTAAATGGCCACAGGTATTGAAATTGAAAGATTGGCCTCCTTCTAATTTATTTGAGGAAAGTTTGCCTCGTCATTGTGCCGAGTTCATATCTTCCTTGCCGTATAAAGAATATACAGATCCTTTCAAAGGCGTTCTTAACCTTGCTGTGAAGTTGCCTGATGGTGTTCTAAAGCCAGACATGGGCCCAAAAACATATATTGCTTATGGATTTGATCAGGAGCTTGGGCGGGGTGATTCTGTGACTAAGCTCCATTGTGATATGTCGGATGCAGTAAATGTGTTGACTCATATTGCTCAAGTGGAATTGAAACCTGATAGTATTTATGCCATTAAGAAACTGACACAAAAGCACCTTAAGCAAGACAAGAGGGAGCTATGTCTACATGGTGATGATCAGGATGTAGAGACCAATGTTGGTGTGCTTGATAATTCACCATCTTCCATAAATGCTTCAGACAAGCAAAATAGTGTCCGAGTCATGGAAAATGAAAAGGGATTATGCAATGGGAAGGCTAATGATGATGGCCTTTCTTCGGGATCAGAGCTCAAAGAGGGGGATTCTTTAGATGGTGCTCTCTGGGATATATTTCGGAGAGAGGATGTATCTAAATTGGAGGAATATCTAAAGAAGCATTTCAGAGAGTTCAGGCATGTACATTGCTCTCCTTTAAAGCAGGTTATTCACCCCATCCACGATCAGACCTTTTATCTGACTCTGGAGCATAAGAGGAAACTTAAGGAGGAGTGTGGAATTGAGCCTTGGACTTTTATTCAGAAGCTAGGAGATGCTGTTTTCATTCCTGCCGGTTGTCCTCACCAAGTCAGAAATCTGAAGTCATGCATCAAGGTCGGGCTTGATTTTGTCTCACCCGAAAATGTTGGTGAGTGTTTCCGTTTGACAGAGGAATTCCGTAAGCTTCCGATAAACCACATATCCGCCAAGGACAAGTTGGAGGTGAAGAAAATGACTATATATGCTATGTTTGATGTGATTACAAAATTGGAGAAAGCAAG 1466 0.4147 ISELVCKAKELEETLNLQDAEQTLDSRCSCLKPVRNADDIHNNTRKAASREDSSDNFLYCPRAVDLHKEDFKHFQWHWSKAEPVIVSNVLESTSGLSWEPLVMWRAFRQIRNTKHKTLLDVKAIDCLDWCEGDINVNQFFTGYTKGRSDWLKWPQVLKLKDWPPSNLFEESLPRHCAEFISSLPYKEYTDPFKGVLNLAVKLPDGVLKPDMGPKTYIAYGFDQELGRGDSVTKLHCDMSDAVNVLTHIAQVELKPDSIYAIKKLTQKHLKQDKRELCLHGDDQDVETNVGVLDNSPSSINASDKQNSVRVMENEKGLCNGKANDDGLSSGSELKEGDSLDGALWDIFRREDVSKLEEYLKKHFREFRHVHCSPLKQVIHPIHDQTFYLTLEHKRKLKEECGIEPWTFIQKLGDAVFIPAGCPHQVRNLKSCIKVGLDFVSPENVGECFRLTEEFRKLPINHISAKDKLEVKKMTIYAMFDVITKLEKA 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme116g00001 488 SUPERFAMILY Clavaminate synthase-like 70 473 - -
Trme116g00001 488 Coils Coil 1 21 - -
Trme116g00001 488 Gene3D Cupin 60 463 - -
Trme116g00001 488 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1 487 IPR045109 GO:0032454|GO:0033169
Trme116g00001 488 CDD cupin_RmlC-like 379 427 - -
Trme116g00001 488 ProSiteProfiles JmjC domain profile. 191 455 IPR003347 -
Trme116g00001 488 SMART cupin_9 172 455 IPR003347 -
Trme116g00001 488 Pfam JmjC domain, hydroxylase 343 438 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme116g00001 Trme-Chr116 40 5953 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trme116g00001 JmjC 2.9e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme116g00001 K15601 - gmx:100780803 768.844