Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme116909g00001 GTTTTAGCAGGAACATATGGATATTTATCACCTGAAGCTGCTACTAGAGGTAAAGCTAGTAGAGAATCTGATGTATATAGTTTTGGAGTTGTTGCATTGGAAATAGCTTGTGGTAGAAAAGCAATTGAACCAAGTCTTGGTGAAGATAATATTTACTTGGTAGATTGGGTTTGGGAACTTTATGGTATAGGTGAAGTTCTTAAAGCTTGTGATTCAAGATTATATGGAGAATTCAATGAGAAGGAAATTGAGAGATTAATGATAGTTGGACTTTGGTGTACTCATATTGATCATGTTCAAAGACCTATGATTAGACAAGTTGTTCAAGTGCTTAATTTTGATGCTCCATTGCCTAATCTTCCATTACAGATGATTGGTTCTACTTATAATACATCATTCTATTCTGTGTCCTCTAAATCTAAGACTCCTGATTTTGCAACTAAGACTTCAACTTCAAGTAATAGTACCTTCACAGGGACAGGGTCCTCCTCACAATCAAGTACTGCCTTTGAAGTCATTTCTCCATCAGCTGCACTTCTAAATACATACTAG 552 0.3569 VLAGTYGYLSPEAATRGKASRESDVYSFGVVALEIACGRKAIEPSLGEDNIYLVDWVWELYGIGEVLKACDSRLYGEFNEKEIERLMIVGLWCTHIDHVQRPMIRQVVQVLNFDAPLPNLPLQMIGSTYNTSFYSVSSKSKTPDFATKTSTSSNSTFTGTGSSSQSSTAFEVISPSAALLNTY 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme116909g00001 183 FunFam Lectin-domain containing receptor kinase A4.3 1 131 - -
Trme116909g00001 183 ProSiteProfiles Protein kinase domain profile. 1 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme116909g00001 183 MobiDBLite consensus disorder prediction 144 165 - -
Trme116909g00001 183 Pfam Protein tyrosine and serine/threonine kinase 7 109 IPR001245 GO:0004672|GO:0006468
Trme116909g00001 183 Gene3D Transferase(Phosphotransferase) domain 1 1 132 - -
Trme116909g00001 183 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 2 154 - -
Trme116909g00001 183 SUPERFAMILY Protein kinase-like (PK-like) 3 132 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme116909g00001 Trme-Chr116909 1 552 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme116909g00001 2 130 Receptor kinase-like Gene Family AT5G10530 54.545 1.64e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trme116909g00001 PK_Tyr_Ser-Thr 2.9e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme116909g00001 - - vvo:131635277 280.026