Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1168315g00001 AGAATTCCAAAAGTACAACAACTCTTGCAGGAATTTTTTGCAGGGAAGGATCTGTGTAAGACCATTAACCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTGCAAGCTGCTTTGTTGAGCGGAGGCTTTAAAAATGTTCCAAACTTGGTTATGCAAGATGTTGCACCTTTGTCTCTCGGTATCGGTGTTCACGGTGATATCATGAATGCTGT 212 0.434 RIPKVQQLLQEFFAGKDLCKTINPDEAVAYGAAVQAALLSGGFKNVPNLVMQDVAPLSLGIGVHGDIMNAV 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1168315g00001 71 FunFam heat shock 70 kDa protein-like 11 41 - -
Trme1168315g00001 71 SUPERFAMILY Actin-like ATPase domain 1 41 IPR043129 -
Trme1168315g00001 71 Gene3D - 1 22 - -
Trme1168315g00001 71 PRINTS 70kDa heat shock protein signature 22 42 - -
Trme1168315g00001 71 PRINTS 70kDa heat shock protein signature 48 67 - -
Trme1168315g00001 71 PANTHER HEAT SHOCK PROTEIN 70KDA 1 70 IPR013126 GO:0005524|GO:0140662
Trme1168315g00001 71 Pfam Hsp70 protein 1 69 IPR013126 GO:0005524|GO:0140662
Trme1168315g00001 71 Gene3D - 23 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1168315g00001 Trme-Chr1168315 3 214 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1168315g00001 1 71 Calmodulin-binding Proteins AT1G56410 68.056 1.61e-26 98.6