Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme116723g00001 GTCTTCCACTGTTTTGGACAATATTTTTGTCTGCATTTCGAAGCCTTTCAACTTGGAATGGCTCCAGTTTACATGGCATTCCTCCGTTTCATGGGTGATGAAAGAGATGCAAGGAGCTACAGCTATAGTCTTGAGGTAGGAGGAAGCGGACGCAAACTAATCTACGAGGGAAGTCCAAGGAGCATTAGAGATAGCCACAAGAAAGTTAGAGACAGTCATGATGGCCTCATTATATACCGAAACATGGCGCTTTTCTTCTCCGGTGGAGATAGGAAAGAGCTGAAATTACGAGTAACAGGAAGGATATGGAAAGAACAGCAAAACCCTGAAGGCGG 335 0.4478 VFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDERDARSYSYSLEVGGSGRKLIYEGSPRSIRDSHKKVRDSHDGLIIYRNMALFFSGGDRKELKLRVTGRIWKEQQNPEGG 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme116723g00001 112 Pfam Seven in absentia protein family 1 99 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trme116723g00001 112 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 105 - -
Trme116723g00001 112 SUPERFAMILY TRAF domain-like 2 103 - -
Trme116723g00001 112 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 1 99 IPR008974 GO:0005515
Trme116723g00001 112 FunFam E3 ubiquitin-protein ligase SINAT5-like 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme116723g00001 Trme-Chr116723 302 636 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme116723g00001 1 106 C3H Transcription Factor Family AT2G41980 77.358 2.63e-58 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme116723g00001 K04506 - gmx:100782764 228.794