Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme116533g00001 CCAGTAGAAGTTACTGAGGATGAAGAAATTCCTGAAGAGGAAGCGGTGTGCAGGATATGTCTTGATGTGTGCGATGAAAGAAATACCTTTAAAATGGAATGCAATTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTTTAATCAAATGGTTCACCACAAAAGGAACCAAGAAATGTGAAATATGCGGGAAAGAGGTTCAGAATTTACCCGTAACCTTGCTCCGCATAACCAGCACTGTTCAACAAAGAAACGGACAGAATCAGCACAACTTAAGTTCAGAAGCAATAAGTGCTTGGCAAGACTTTGTGGTGCTTGTCCTGATAAGCACGATATGCTATTTTTTCTTCCTTGAACAGCTATTGGTATGCCTATTTCCTTTGATATAA 390 0.4 PVEVTEDEEIPEEEAVCRICLDVCDERNTFKMECNCKGDLRLVHEECLIKWFTTKGTKKCEICGKEVQNLPVTLLRITSTVQQRNGQNQHNLSSEAISAWQDFVVLVLISTICYFFFLEQLLVCLFPLI 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme116533g00001 129 SUPERFAMILY RING/U-box 13 67 - -
Trme116533g00001 129 ProSiteProfiles Zinc finger RING-CH-type profile. 9 70 IPR011016 GO:0008270
Trme116533g00001 129 Pfam RING-variant domain 17 63 IPR011016 GO:0008270
Trme116533g00001 129 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 72 IPR013083 -
Trme116533g00001 129 SMART ringv_2 16 64 IPR011016 GO:0008270
Trme116533g00001 129 PANTHER OS02G0165000 PROTEIN 6 123 - -
Trme116533g00001 129 CDD RING_CH-C4HC3_MARCH 17 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme116533g00001 Trme-Chr116533 2 533 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme116533g00001 3 122 C3H Transcription Factor Family AT2G37950 29.231 2.67e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme116533g00001 - - cam:101502163 213.772