Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme116532g00001 ATGGCACTTCCCAAAACGTTTTCAAACAATGTCAAAAAGAAGTTGCCAGAAAATGTGGTCCTAAAAGGTCCTGGTGGAGTTGTGTGGGATATAGAGCTGACAACTAGAGACGGTATTGTGTATTTCACGAACGGTTGGCAACAATTTGTGAAAGATCATTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGGCGAGTCATTGTTTGAGGTTTTAATCTTTGACGGGGAGAGTTTCTGTGAGAAGGCAGCTTCTTATTTTGTTCGAAAATGTGGGCGTGCTGCTGCTAATACCGAACAAGGGGTTGGATGTTCTAGCAAGAAAAAGGACACAGATAATTCTGTTGAAGAAGTCAATACTCCTTCGAATGGTGTTGATGAAGGTGTTTCACCTGAAAAATCTTTACATCTAAACAGTATCCGAGTGCCATTTGCTGTACCTGTTGAAACTACCAACGGAAAGACTTCTAATGGTGGTGTTGAATCTGCCTCCCC 500 0.41 MALPKTFSNNVKKKLPENVVLKGPGGVVWDIELTTRDGIVYFTNGWQQFVKDHSLKENDFLVFKYNGESLFEVLIFDGESFCEKAASYFVRKCGRAAANTEQGVGCSSKKKDTDNSVEEVNTPSNGVDEGVSPEKSLHLNSIRVPFAVPVETTNGKTSNGGVESASP 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme116532g00001 167 SMART B3_2 1 79 IPR003340 GO:0003677
Trme116532g00001 167 ProSiteProfiles B3 DNA-binding domain profile. 1 79 IPR003340 GO:0003677
Trme116532g00001 167 SUPERFAMILY DNA-binding pseudobarrel domain 1 77 IPR015300 -
Trme116532g00001 167 MobiDBLite consensus disorder prediction 103 134 - -
Trme116532g00001 167 CDD B3_DNA 1 77 IPR003340 GO:0003677
Trme116532g00001 167 Pfam B3 DNA binding domain 1 77 IPR003340 GO:0003677
Trme116532g00001 167 Gene3D - 1 82 IPR015300 -
Trme116532g00001 167 PANTHER B3 DOMAIN-CONTAINING 3 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme116532g00001 Trme-Chr116532 1 573 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme116532g00001 1 96 REM Transcription Factor Family AT4G33280 53.608 2.37e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme116532g00001 B3 1.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme116532g00001 - - tpra:123885991 325.865