Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme116456g00001 GTTTGGACTGTTTCCTCGGGCTTTTGCTTTGTTACGTTTACTGAGCACACTAATGCTGTTACGGCTCTGCATTTTACAAGTAACAATTGCCTGCTCAGTGCATCTCTTGACGGGACTGTTCGTGCGTGGGATTTATTACGTTATCGGAATTTTAGAACATTTACTACCCCTTCTTCAAGACAGTTTGTTTCTTTGGCAGCAGATCAAAGTGGTGAAGTGATATGTGCGGGCACTTCAGATTCCTTTGAGGTAACCATTTCACAGAAGTTAGGTGGTTTCTAA 282 0.4255 VWTVSSGFCFVTFTEHTNAVTALHFTSNNCLLSASLDGTVRAWDLLRYRNFRTFTTPSSRQFVSLAADQSGEVICAGTSDSFEVTISQKLGGF 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme116456g00001 93 Pfam WD domain, G-beta repeat 9 44 IPR001680 GO:0005515
Trme116456g00001 93 SMART WD40_4 6 44 IPR001680 GO:0005515
Trme116456g00001 93 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 45 - -
Trme116456g00001 93 Gene3D - 1 91 IPR015943 GO:0005515
Trme116456g00001 93 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 53 IPR001680 GO:0005515
Trme116456g00001 93 PANTHER WD40 REPEAT PROTEIN 1 86 IPR027145 -
Trme116456g00001 93 SUPERFAMILY WD40 repeat-like 1 81 IPR036322 GO:0005515
Trme116456g00001 93 ProSitePatterns Trp-Asp (WD) repeats signature. 31 45 IPR019775 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme116456g00001 1 80 U-box Gene Family AT1G04510 37.037 2.68e-09 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme116456g00001 K14558 - tcc:18595772 165.236