Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme116444g00001 ATGTTTTCTGTGATTATTACAGTGATGTCTGCGGATGATGGTAAAAGTGTTGTTATGAAGGGTGTAACACACGGTGCTTGCGATTATCTAATTAAACCTGTTCGTATCGAGGCTTTGAAGAACATATGGCAACATGTGGTTAGGAAGAAAAAGAATGAGTGGAAAGATACAGAACAATCGGGTAGCGCTGATGAAGGAGATCGACATCCAAAGGCATCGGATGACGCTGATTATTCGTCTTCTGCTAATGAAGGTAATTGGAGAAACTCGAGAAAGAGAAGGGACGATGAAGAGGATGGTGACGATAGAGATGACTCGTCAACACTAAAGAAGCCTCGTGTTGTTTGGTCTGTGGAACTCCATCAACAGTTTGTGGCTGCTGTCGATCAACTGGGAATTGACA 403 0.4293 MFSVIITVMSADDGKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKKKNEWKDTEQSGSADEGDRHPKASDDADYSSSANEGNWRNSRKRRDDEEDGDDRDDSSTLKKPRVVWSVELHQQFVAAVDQLGID 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme116444g00001 134 ProSiteProfiles Response regulatory domain profile. 1 47 IPR001789 GO:0000160
Trme116444g00001 134 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 129 IPR045279 GO:0009736
Trme116444g00001 134 SUPERFAMILY CheY-like 4 53 IPR011006 -
Trme116444g00001 134 Gene3D - 108 134 - -
Trme116444g00001 134 MobiDBLite consensus disorder prediction 87 110 - -
Trme116444g00001 134 MobiDBLite consensus disorder prediction 50 112 - -
Trme116444g00001 134 Gene3D - 3 105 - -
Trme116444g00001 134 MobiDBLite consensus disorder prediction 50 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme116444g00001 Trme-Chr116444 172 574 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme116444g00001 6 134 Response Regulator Gene Family AT4G16110 69.343 6.06e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trme116444g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme116444g00001 - K14491 gmx:100781102 223.787