Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11634g00001 ATGCTCCAGATCCTAAATGGGCGTAGGTCTGCCAACATTGGAGTGTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTACTCATATTTCAAAGGTCTTATCTGTGACATTGGATGAATGGTCAGATGATGAAGTAGATGCAATGATAGAAGTTGGAGGAAATGCTTCCGCTAATTCAATTTACGAGGCTTATATTCCTGAAGGATATACAAAACCTGGACCAGATGCCAATCCTGAGCAGCGTTCAAAGTTTATACGGTCAAAGTATGAGTTGCAAGAATTTTTGAAGCCTAGTTTGCGCATTGTG 315 0.4063 MLQILNGRRSANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSDDEVDAMIEVGGNASANSIYEAYIPEGYTKPGPDANPEQRSKFIRSKYELQEFLKPSLRIV 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11634g00001 105 SMART arf_gap_3 1 105 IPR001164 GO:0005096
Trme11634g00001 105 CDD ArfGap 10 92 - -
Trme11634g00001 105 PRINTS HIV Rev interacting protein signature 35 56 IPR001164 GO:0005096
Trme11634g00001 105 PRINTS HIV Rev interacting protein signature 14 31 IPR001164 GO:0005096
Trme11634g00001 105 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 105 IPR001164 GO:0005096
Trme11634g00001 105 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 10 104 IPR044518 GO:0005096|GO:0005543
Trme11634g00001 105 Pfam Putative GTPase activating protein for Arf 10 99 IPR001164 GO:0005096
Trme11634g00001 105 Gene3D Arf GTPase activating protein 8 103 IPR038508 -
Trme11634g00001 105 SUPERFAMILY ArfGap/RecO-like zinc finger 10 100 IPR037278 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11634g00001 10 105 C2H2 Transcription Factor Family AT4G21160 85.417 9.97e-58 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11634g00001 K12486 - gmx:100810806 188.348