Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme116284g00001 ATGAAATTTTACACATCTTGGGTTGATACTGCAAATAGGAATATCAACTTTGTCACTGAATTGTTTACTTCTGGTACTCTTAGACAGTATAGGCAAAAGCACAAGAGGGTTAACATAAGAGCAGTGAAGCATTGGTGTAGACAGATCCTGCAAGGACTTCTATATCTTCATAGCCATGACCCGCCGGTGATCCATAGAGATCTTAAATGTGATAATATTTTCATTAATGGTAACCAAGGGGAAGTTAAGATCGGGGATCTTGGTTTGGCTGCGGTTCTCCGGAAATCTCATGCTGCTCATTGTGTAG 307 0.4039 MKFYTSWVDTANRNINFVTELFTSGTLRQYRQKHKRVNIRAVKHWCRQILQGLLYLHSHDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAVLRKSHAAHCV 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme116284g00001 102 ProSiteProfiles Protein kinase domain profile. 1 102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme116284g00001 102 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 102 - -
Trme116284g00001 102 Gene3D Transferase(Phosphotransferase) domain 1 1 101 - -
Trme116284g00001 102 SUPERFAMILY Protein kinase-like (PK-like) 3 96 IPR011009 -
Trme116284g00001 102 Pfam Protein kinase domain 4 97 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme116284g00001 102 ProSitePatterns Serine/Threonine protein kinases active-site signature. 63 75 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme116284g00001 Trme-Chr116284 116 534 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme116284g00001 1 102 MAP Kinase Kinase Kinase AT5G28080 89.216 1.28e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Trme116284g00001 Pkinase 8.5e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme116284g00001 K08867 - gmx:100790554 214.542