Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme116269g00001 ACAGAAGCAACTACACCTACAAGTACAAGCAATGCAACACAATCGAATGAAGCCGCAGCAACAAACGAAGAAGAAACCGGAGAGAAAAGAAGAAGATACAGAGGAGTAAGACAGAGACCATGGGGAAAATGGGCAGCAGAAATTCGCGATCCACACAAAGCAGCAAGAGTATGGCTTGGAACATTCGACACAGCAGAAGCTGCAGCAAGAGCTTACGATGAAGCTGCATTAAGATTCAGAGGAAACAGAGCAAAACTCAACTTCCCTGAAAATGTTACATCAACAAGACCAAATTTTCCGGCAAATACTTCAACCGTATCCAATTCTCCAGCAACCCATTATTCTCCAGCACCACCACAACCACTGCAAATGCAGACACAACCACCTTTTGTTCAATTTCAAGGAACTTCTGATTTGTTAAGAGACTATTATCAGTATTCACAGCTTCTAAAAGGTTCAGGTGATTTTCAAGGACTTGAGCAATGGTTCTATGAATCACAAATG 504 0.4206 TEATTPTSTSNATQSNEAAATNEEETGEKRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVTSTRPNFPANTSTVSNSPATHYSPAPPQPLQMQTQPPFVQFQGTSDLLRDYYQYSQLLKGSGDFQGLEQWFYESQM 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme116269g00001 168 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Trme116269g00001 168 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Trme116269g00001 168 MobiDBLite consensus disorder prediction 89 115 - -
Trme116269g00001 168 Pfam AP2 domain 32 81 IPR001471 GO:0003700|GO:0006355
Trme116269g00001 168 PANTHER DNA-BINDING DOMAIN 14 107 IPR044808 GO:0003700|GO:0009873
Trme116269g00001 168 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Trme116269g00001 168 Gene3D AP2/ERF domain 31 91 IPR036955 GO:0003700|GO:0006355
Trme116269g00001 168 SUPERFAMILY DNA-binding domain 32 91 IPR016177 GO:0003677
Trme116269g00001 168 MobiDBLite consensus disorder prediction 1 21 - -
Trme116269g00001 168 MobiDBLite consensus disorder prediction 1 38 - -
Trme116269g00001 168 FunFam Ethylene-responsive transcription factor 2 31 90 - -
Trme116269g00001 168 MobiDBLite consensus disorder prediction 89 113 - -
Trme116269g00001 168 CDD AP2 40 91 IPR001471 GO:0003700|GO:0006355
Trme116269g00001 168 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme116269g00001 Trme-Chr116269 134 637 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme116269g00001 8 92 AP2-EREBP Transcription Factor Family AT5G61890 68.605 6.64e-36 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme116269g00001 AP2 1.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme116269g00001 - - tpra:123903609 280.411