Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11608g00001 GTTGGGGGTGGAGTTGTTTGGATAGGGGGTGGAAATAACAACAACAACCAAAACCCAAAATCCTATGAATCTCCAACATCTAAAATGGATTCAGCTTATTCTGTTCTACAAGCTTGGAAATCTTCAATCACTGATGACCCTTTAAAGATTCTAGATTCTTGGGTTGGTTCAAATATTTGTTCATACAAAGGAATTTTCTGTGCAAATCCTGAAAATGGAATAGCTTCTACAACAGCTTCTGCTTCAGTAGTTGTTGCTGGAATAGATCTAAACCATGCAAATCTTAAAGGAACATTTGTAAAAGAACTATCTTTACTCACTGACATGACACTTCTTCATCTCAACAGTAACAGATTCAGTGGAACAGTTCCTGAAAACTTCAAAGATCTTGTTTCTCTTCAAGAGTTAGATTTAAGCAATAATCAACTTTCAGGTTCATTACCTCAAGAGCTTTTCAACAAGAATCTTGATGCTATATTTCTCAACAATAATCAATTTGAAGGTGAAATTCCTACAAACTTAGGTAACTCACCTGCTTCTGTGATTAACTTAGCTAACAACAAATTGAGTGGAAATATTCCAGCTAGTTTTGGTTTCATGGGATCAAAGATAAAAGAGATTCTGTTTCTGAATAATCAGTTAACTGGTTGTATACCAGAAGGAGTTGGACTTTTTACTGAAATGGAAGTTCTTGATGTGAGTTTCAATTCATTGATGGGTCATTTACCTGATACATTATCTTGTTTACAGAATATTGAAGTGCTTAATTTGGCTCATAATCAGCTTTCTGGAGAATTATCAGATATAATCTGTTCTTTGAGAAGTTTGGCTAATTTAACTGTTGCTTATAATTTCTTTTCTGGGTTTAGTCAACAATGCTCAAAGCTGAATTTTAGGAATGTTGGTTTTGATTTTTCACTTAATTGTATTCCTGGGAGGATCATGCAGAGACCTCAACCTGAGTGTTCTATGATCCCAGGTGGAAGCTTAAGTTGTCTCAGAATTCCAACACCTAAACCTCTTGTTTGTGGTTCAATGTATGTAAGTGCTTCTAAGAACACTGATTCCACTTCACAAGCACAATCTCCTTGA 1092 0.3526 VGGGVVWIGGGNNNNNQNPKSYESPTSKMDSAYSVLQAWKSSITDDPLKILDSWVGSNICSYKGIFCANPENGIASTTASASVVVAGIDLNHANLKGTFVKELSLLTDMTLLHLNSNRFSGTVPENFKDLVSLQELDLSNNQLSGSLPQELFNKNLDAIFLNNNQFEGEIPTNLGNSPASVINLANNKLSGNIPASFGFMGSKIKEILFLNNQLTGCIPEGVGLFTEMEVLDVSFNSLMGHLPDTLSCLQNIEVLNLAHNQLSGELSDIICSLRSLANLTVAYNFFSGFSQQCSKLNFRNVGFDFSLNCIPGRIMQRPQPECSMIPGGSLSCLRIPTPKPLVCGSMYVSASKNTDSTSQAQSP 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11608g00001 363 Gene3D Ribonuclease Inhibitor 204 325 IPR032675 -
Trme11608g00001 363 ProSiteProfiles Leucine-rich repeat profile. 132 154 IPR001611 GO:0005515
Trme11608g00001 363 SUPERFAMILY L domain-like 33 296 - -
Trme11608g00001 363 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 21 345 - -
Trme11608g00001 363 FunFam Nuclear pore complex protein NUP107 29 195 - -
Trme11608g00001 363 Gene3D Ribonuclease Inhibitor 30 203 IPR032675 -
Trme11608g00001 363 PRINTS Leucine-rich repeat signature 249 262 - -
Trme11608g00001 363 PRINTS Leucine-rich repeat signature 133 146 - -
Trme11608g00001 363 Pfam Leucine rich repeat 110 166 IPR001611 GO:0005515
Trme11608g00001 363 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Trme11608g00001 363 SMART LRR_typ_2 249 273 IPR003591 -
Trme11608g00001 363 SMART LRR_typ_2 130 154 IPR003591 -
Trme11608g00001 363 SMART LRR_typ_2 106 129 IPR003591 -
Trme11608g00001 363 SMART LRR_typ_2 225 248 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11608g00001 Trme-Chr11608 246 1409 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11608g00001 22 334 Leucine-rich Repeat extension Gene Families AT3G24480 44.023 3.12e-87 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11608g00001 - - psat:127117995 620.928