Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1159579g00001 GTTCCTGTTGTTATGGCTGGTGTTTTGGGTATTTATGGTTTGATTATTGCGGTTATTATTAGTACTGGGATTAATCCTAAGGCTAAATCTTATTATCTTTTTGATGGTTATGCTCATCTTTCTTCTGGTCTTGCTTGTGGTCTTGCTGGTTTATCTGCTGGTATGGCTATTGGGATTGTTGGTGATGCTGGTGTTAG 197 0.3858 VPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGV 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1159579g00001 65 NCBIfam V-type ATPase subunit C 1 65 IPR011555 GO:0033179|GO:0046961|GO:1902600
Trme1159579g00001 65 SUPERFAMILY F1F0 ATP synthase subunit C 31 64 IPR035921 -
Trme1159579g00001 65 Gene3D - 1 65 IPR035921 -
Trme1159579g00001 65 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 1 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1159579g00001 Trme-Chr1159579 1 197 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1159579g00001 1 65 Primary Pumps ATPases(2) AT4G38920 100.000 3.09e-39 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1159579g00001 K02155 - jre:108991995 113.235