Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme115939g00001 GAATTGTTGGCATTGGAGGAGCGAATAGGAGACGTAAGCACTGGATTGAGTGAAGATATGATTCATAAGTTTATGAAACAGCGATTTTTCATGTCTCTCATGACAGACTCTTCTTCTGATCTTGAACCTTGCTGTATCTGTCAGGAGGAATNNNCTGATGGACAGAGTATTGGTTTGCTAGATTGTGGGCATGAGTTCCACAGTAACTGCATCAAGCAGTGGCTAATGCAGAAGAATCTGTGCCCAATTTGCAAAACAACAGCCTTGGCTATGTGA 276 0.4203 ELLALEERIGDVSTGLSEDMIHKFMKQRFFMSLMTDSSSDLEPCCICQEEXXDGQSIGLLDCGHEFHSNCIKQWLMQKNLCPICKTTALAM 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme115939g00001 91 FunFam E3 ubiquitin-protein ligase MBR2 11 89 - -
Trme115939g00001 91 SUPERFAMILY RING/U-box 27 88 - -
Trme115939g00001 91 SMART ring_2 44 84 IPR001841 -
Trme115939g00001 91 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 89 IPR013083 -
Trme115939g00001 91 Pfam Ring finger domain 44 85 IPR001841 -
Trme115939g00001 91 ProSiteProfiles Zinc finger RING-type profile. 44 85 IPR001841 -
Trme115939g00001 91 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 89 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme115939g00001 Trme-Chr115939 119 492 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme115939g00001 1 89 C3H Transcription Factor Family AT2G15530 64.130 8.78e-36 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme115939g00001 - K19041 gmx:100809024 162.155