Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme115567g00001 ATGAGAAATTGGGGAAAGTGGGTGTCAGAAATCCGCGAGCCTCGCAAGAAATCACGGATTTGGCTCGGCACTTTCCCCACCGCTGAAATGGCTGCGAGAGCGCACGACGCAGCTGCGCTCTGTGTTAAAGGTAAAACCGCCATTCTCAATTTTCCTCACCTGGCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNATGGACATCAAATCAGAATCATTGTCATCATCATCTTCTTCTTCATTTACATCGTTGTCATCGATGACATCATCGATAACAACAATCTCATCGTCGACAAGTCTGTTAATGAAAACAGCGACAACGCTGTCTTCATCAGCAGACTTGTCAACTACTTCTGAAGAACTTAGTGAGATTATTGAGCTACCTACTTTGGAAAATGTTTATGATGATGTTGGAAAAGATGAGTTTTTGTTTGTTGACTCACAATCACAAGACTATGCTTGGATGTATCAGCAACCAATGACATGGTTACATACAACACAAGAAGATGGTTGTTGTGGTGATGATGGTGTTGTAACTAGTTTCGAGAGTTTTCTCTGGAATTACTAG 606 0.3729 MRNWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDAAALCVKGKTAILNFPHLAXXXXXXXXXXXXXXXXXXXXXXXMDIKSESLSSSSSSSFTSLSSMTSSITTISSSTSLLMKTATTLSSSADLSTTSEELSEIIELPTLENVYDDVGKDEFLFVDSQSQDYAWMYQQPMTWLHTTQEDGCCGDDGVVTSFESFLWNY 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme115567g00001 201 Coils Coil 54 55 - -
Trme115567g00001 201 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 146 - -
Trme115567g00001 201 ProSiteProfiles AP2/ERF domain profile. 1 52 IPR001471 GO:0003700|GO:0006355
Trme115567g00001 201 FunFam Ethylene-responsive transcription factor 2 1 53 - -
Trme115567g00001 201 SUPERFAMILY DNA-binding domain 2 53 IPR016177 GO:0003677
Trme115567g00001 201 CDD AP2 1 54 IPR001471 GO:0003700|GO:0006355
Trme115567g00001 201 SMART rav1_2 1 58 IPR001471 GO:0003700|GO:0006355
Trme115567g00001 201 Gene3D AP2/ERF domain 1 53 IPR036955 GO:0003700|GO:0006355
Trme115567g00001 201 Pfam AP2 domain 3 44 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme115567g00001 Trme-Chr115567 18 623 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme115567g00001 1 201 AP2-EREBP Transcription Factor Family AT2G25820 44.608 1.74e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme115567g00001 AP2 1.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme115567g00001 K09286 - gmx:100305349 157.918