Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme115548g00001 ATGACATCAAACAGGTTGACTGAGAAAAGTGATGTTTACAGCTTTGGAGTTGTTCTTTTGGAGATAATCACAAGTCAACCAGCCATAATAAAATCACCTGACAAGACTCACATAAGTCACTGGGTTAGATCCATGCTTTATAAAGGGGATATAAAGAATATTGTTGACTCAAGATTACAACAAAATTTTGACACTAACTCTGCTTGGAAAGCTGTTGAGATAGGAATGGCTTGTGTGTCCCTTAATTCTTCCGATAGGCCAAACATGAGTGAAGTAGTGAATGAGCTAAAGGAGTGTTTGGCTGCAGAATCAGCTCGAAAAAGGGCTGGTCGTCGTAAAACAAAAAAGGACGGTTCAATTGAGTTGGTTCCCCTCAATCTTGCAATTGAACTCGGTCCTATAGCTAGGTAG 411 0.399 MTSNRLTEKSDVYSFGVVLLEIITSQPAIIKSPDKTHISHWVRSMLYKGDIKNIVDSRLQQNFDTNSAWKAVEIGMACVSLNSSDRPNMSEVVNELKECLAAESARKRAGRRKTKKDGSIELVPLNLAIELGPIAR 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme115548g00001 136 SUPERFAMILY Protein kinase-like (PK-like) 5 99 IPR011009 -
Trme115548g00001 136 PANTHER OS07G0107800 PROTEIN-RELATED 3 103 - -
Trme115548g00001 136 Gene3D Transferase(Phosphotransferase) domain 1 1 121 - -
Trme115548g00001 136 Pfam Protein tyrosine and serine/threonine kinase 3 96 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme115548g00001 Trme-Chr115548 203 613 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme115548g00001 3 136 Receptor kinase-like Gene Family AT1G51830 55.224 7.60e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trme115548g00001 PK_Tyr_Ser-Thr 2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme115548g00001 - - gmx:100779474 171.014