Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme115509g00001 GAGTTCAATAGAGAACCACTATATGCAAAGTTTCGACTTCGTGAGCCGTTCAAGAAGCCAATATTGAGCTCAGAACCATCGATATCTGTTCACCAGTTGCAGCCACAAGATCAGTTTATTATATTTGCATCTGATGGGCTCTGGGAGCACCTTAGCAATCAAGAAGCGGTTGATATAGTTCAAAATAATCCCCACTCTGGAATTGCGAGGAGGCTTGTGAAATCTGCACTTCAAGAAGCAGCAAAGAAGAGAGAAATGAGATATTCAGACTTAAATGAGATTGACCGTGGGGTTCGTAGGCATTTTCACGATGATATCACGGTGATTGTTGTGTTTATCGACTCAAATCTCGTGAGTAGTGCTAGCAATGTTAAGTTCAGTAATATTTCCGTTCGAGGGGGCGGTATCAACTTTCGTCCTAACACACTGGCACCGACATAA 441 0.4263 EFNREPLYAKFRLREPFKKPILSSEPSISVHQLQPQDQFIIFASDGLWEHLSNQEAVDIVQNNPHSGIARRLVKSALQEAAKKREMRYSDLNEIDRGVRRHFHDDITVIVVFIDSNLVSSASNVKFSNISVRGGGINFRPNTLAPT 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme115509g00001 146 CDD PP2Cc 17 113 IPR001932 -
Trme115509g00001 146 Gene3D - 1 125 IPR036457 -
Trme115509g00001 146 PANTHER PROTEIN PHOSPHATASE 19 111 IPR015655 GO:0004722|GO:0006470
Trme115509g00001 146 Pfam Protein phosphatase 2C 18 82 IPR001932 -
Trme115509g00001 146 SUPERFAMILY PP2C-like 10 114 IPR036457 -
Trme115509g00001 146 ProSiteProfiles PPM-type phosphatase domain profile. 1 113 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme115509g00001 Trme-Chr115509 85 640 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme115509g00001 1 146 PP2C-type Phosphatase Gene Family AT4G38520 76.027 3.42e-79 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme115509g00001 - - jre:109006616 257.684