Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11548g00001 ATGCATGCAGATACNGAGACAGATGAAGTGTATGCACAGATGACCTTGCAGCCTCTAAATCCTGAAGAGCAAAAAGAGGCATATCATCCTGCAGAGTTGGGAACTGCAAACAAACAGCCAACAAACTACTTCTGCAAAATTTTGACAGCCAGTGATACAAGTACTCATGGTGGATTTTCTGTTCCTCGCCGAGCAGCTGAAAAAGTTTTTCCTCCACTGGACTTTTCACAACAGCCTCCTGCTCAAGAGTTGATTGCAAGGGATTTGCATGGTAATGACTGGAAATTCAAACATATCTTCCGAGGCCAGCCCAAGAGGCATTTACTTACAACGGGGTGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCAGTGCTGTTTATATGGAATGAAAAAAATCAATTGCTTCTTGGCATTCGGCGTGCTAATCGACCCCAACATATGATGCCTTCATCAGTGTTGTCAAGTGATAGCATGCACTTAGGGCTGCTGGCTGCTGCAGCTCATGCAGCTGCAACGAACAGTCGTTTCACCATTTTCTATAACCCACGTGCTAGCCCATCTGAATTTGTCATACCCCTTGCAAAGTATGTTAAAGCTGTATATCATACTCGAGTTTCAGTTGGTATGCGCTTCAGGATGCTTTTTGAAACAGAGGAATCTAGTGTTCGGCG 683 0.4436 MHADTETDEVYAQMTLQPLNPEEQKEAYHPAELGTANKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNDWKFKHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQHMMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRR 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11548g00001 228 CDD B3_DNA 43 144 IPR003340 GO:0003677
Trme11548g00001 228 SUPERFAMILY DNA-binding pseudobarrel domain 29 173 IPR015300 -
Trme11548g00001 228 FunFam Auxin response factor 42 146 - -
Trme11548g00001 228 Gene3D - 42 145 IPR015300 -
Trme11548g00001 228 SMART B3_2 44 146 IPR003340 GO:0003677
Trme11548g00001 228 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 228 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trme11548g00001 228 Pfam Auxin response factor 170 228 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trme11548g00001 228 ProSiteProfiles B3 DNA-binding domain profile. 44 146 IPR003340 GO:0003677
Trme11548g00001 228 Pfam B3 DNA binding domain 44 145 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11548g00001 Trme-Chr11548 321 1613 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11548g00001 1 228 B3 DNA Binding Superfamily AT1G30330 91.667 2.82e-144 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trme11548g00001 B3 5.2e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11548g00001 - - vvo:131603524 449.514