Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme11546g00001 ATGCCTTCATCGGTGTTGTCAAGTGATAGTATGCACTTGGGACTTCTTGCTGCAGCAGCTCATGCGGCTCAAACCAATAGTCGTTTCACTATTTTCTATAACCCACGTGCTTGCCCATCAGAATTTGTCATACCCTTAGCGAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGTTTCAGGATGCTTTTTGAAACAGAAGAGTCTAGTGTGCGACGATACATGGGTACAATAACGGGCATTTGTGACCTAGATTCTGTCCGGTGGCCGAACTCACATTGGCGCTCCGTAAAGGTTGGGTGGGATGAATCCACTGCAGGAGAGAGGCAACCTAGAGTGTGTTTGTGGGAAATTGAGCCGTTAACAACATTTCCTATGTATCCATCACCATTCCCCCTTAGGCTTAAAAGACCATGGCCTCCTGGATTGCCTTCGTTCAATGGCATGAAAGATGACGATTTTGGCATGAATTCTCCTTTGATGTGGCTCCGAGACGCCGATAGAGGGCTTCCGTCTCTTAATTTTCAAGGGATTGGTCTTAATCCTTGGATGCAACCAAGGTTTGATCCCTCTATGCTGAATATGCAAACAGATATGTATCAAGCTGTGGCTGCTGCTGCACTTCAGGACTTGAGAAGTGTCGATCCTTCCAAACAGCATCCTGGTTCCTTACTTCAATTTCAGCAACCGCAGAACTTTCCAAACCGGACTGCTGCTTTAATGCAGGCGCAGATGTTGCAACAGTCGCAATCTCAACAGGCTTTTCAAAATAATAATCCGGACAATCAAAATCTGTCACAATCTCAGCTACAAACTCAGAGTCATCCTCAGCAGCATCTACAGCATCAGCACTCGTTCAATAATCAACTCCATAATCATAATCAGCAGCAACAACAAACTCAACAGCAAGTGGTGGATAATCAGCAGAACTCTGGTTCGGTCTCTACAATGTCTCAGTTTGTTTCAGCGCCACAACCTCAATCACCACCACCTATGCAAGCTCTCTCTTCACT 1025 0.4537 MPSSVLSSDSMHLGLLAAAAHAAQTNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDSVRWPNSHWRSVKVGWDESTAGERQPRVCLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGMKDDDFGMNSPLMWLRDADRGLPSLNFQGIGLNPWMQPRFDPSMLNMQTDMYQAVAAAALQDLRSVDPSKQHPGSLLQFQQPQNFPNRTAALMQAQMLQQSQSQQAFQNNNPDNQNLSQSQLQTQSHPQQHLQHQHSFNNQLHNHNQQQQQTQQQVVDNQQNSGSVSTMSQFVSAPQPQSPPPMQALSSL 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme11546g00001 342 Pfam Auxin response factor 19 102 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trme11546g00001 342 MobiDBLite consensus disorder prediction 247 342 - -
Trme11546g00001 342 MobiDBLite consensus disorder prediction 247 327 - -
Trme11546g00001 342 Gene3D - 57 129 - -
Trme11546g00001 342 FunFam Auxin response factor 57 129 - -
Trme11546g00001 342 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 319 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme11546g00001 Trme-Chr11546 104 1647 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme11546g00001 1 249 B3 DNA Binding Superfamily AT1G30330 80.952 1.38e-133 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme11546g00001 - - vvo:131603524 455.292