Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme115462g00001 ATGAACGCAGGGCAGCCACGAAGGCATTTGCTTACAACCGGATGGAGTGCATTTGTTAACAAGAAGAAGCTTGTATCTGGAGACGCTGTTCTTTTCCTCAGGGGAGAGGATGGAGAATTGAGATTGGGAGTCCGTAGGGCGGCTCAATTGAAAAGCAGCAGTAACTTTTCATCTATCTCTGGCCAGCAATTGAATCTTGGAAGCCTTACGGATATAGTTAATGCTTTATCTACTAGATGTGCCTTTAACATTCACTACAATCCGAGGATTGGTTCATCTGAGTTCATCATACCTATGCACAAATTCTTAAAGAGCCTTGATTATTCTTACTCAGTTGGAATG 342 0.4269 MNAGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGVRRAAQLKSSSNFSSISGQQLNLGSLTDIVNALSTRCAFNIHYNPRIGSSEFIIPMHKFLKSLDYSYSVGM 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme115462g00001 114 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 3 114 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trme115462g00001 114 Pfam Auxin response factor 73 114 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trme115462g00001 114 Gene3D - 1 48 IPR015300 -
Trme115462g00001 114 ProSiteProfiles B3 DNA-binding domain profile. 1 48 IPR003340 GO:0003677
Trme115462g00001 114 Pfam B3 DNA binding domain 5 47 IPR003340 GO:0003677
Trme115462g00001 114 SUPERFAMILY DNA-binding pseudobarrel domain 4 56 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme115462g00001 Trme-Chr115462 1 562 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme115462g00001 4 114 B3 DNA Binding Superfamily AT2G33860 60.360 1.36e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trme115462g00001 B3 2e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme115462g00001 K14486 - gmx:100796970 191.815