Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme115379g00001 ATGGTAGATGAGAACACAATTTGTGTGGCTGCAATCTTAGGTTCAACTTATAACGGAGAATTCGAAGATGTCAAACTCTTGAATGATCTCTTGTTAGAGAAAAACAAGCAAACTGGATGGGATACACCTATTCATGTTGATGCYGCGAGTGGTGGCTTTATTGCTCCTTTCCTATATCCCGAGCTAGAGTGGGATTTCAGACTCCCATTAGTGAAGAGCATAAATGTTAGTGGCCATAAGTATGGACTTGTTTATGCMGGAATCGGCTGGGTTATATGGAGGACTAAAGAAGACTTGCCTGAAGACCTTATCTTCCATATTAACTACCTTGGAGCTGACCAACCTACCTTCACTCTAAATTTTTCAAAAG 370 0.4054 MVDENTICVAAILGSTYNGEFEDVKLLNDLLLEKNKQTGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKEDLPEDLIFHINYLGADQPTFTLNFSK 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme115379g00001 123 Pfam Pyridoxal-dependent decarboxylase conserved domain 4 123 IPR002129 GO:0016830|GO:0019752|GO:0030170
Trme115379g00001 123 SUPERFAMILY PLP-dependent transferases 1 122 IPR015424 -
Trme115379g00001 123 Gene3D - 1 123 IPR015421 GO:0003824
Trme115379g00001 123 PANTHER GLUTAMATE DECARBOXYLASE 1 123 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme115379g00001 Trme-Chr115379 157 622 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme115379g00001 1 123 Calmodulin-binding Proteins AT5G17330 95.935 3.46e-84 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme115379g00001 K01580 - gmx:100781791 244.588