Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme115376g00001 AACATCTCAAGTGACAAAATTCTAATAAATCAGAGGTACAACCCATTGTTGGATGATTATGGCCTGTACAAGCTTCTTACAAATGATATTGTCTTCTCTGCGCTTAAAGCTAGTGCAACAAACGGTTACATGGCTCCCGAATACACAACGACCGGTCGATTTTCGGAGGCAAGTGATGTTTATGCTTTTGGAATGGTGCTTTTCCAAATCCTTTCAGGGAAACAAGAGATAACTAGCTCAATATTGCTTGCTGCAGAGTCCTTCAATTTCAAGGAATTTATTGATCCAAATCTTAATGGAAGATTTTTTGAATGTGATGCAGCTAAATTGACAAAAATAGCTTTGTTTTGCATGCATGAGTCTCCATTTGAGAGGCCATCTATGGAAGCAATTGTTAAAGAATTGAGCAATTGTACAAGTTGTCTTTGA 429 0.3753 NISSDKILINQRYNPLLDDYGLYKLLTNDIVFSALKASATNGYMAPEYTTTGRFSEASDVYAFGMVLFQILSGKQEITSSILLAAESFNFKEFIDPNLNGRFFECDAAKLTKIALFCMHESPFERPSMEAIVKELSNCTSCL 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme115376g00001 142 ProSiteProfiles Protein kinase domain profile. 1 142 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme115376g00001 142 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 138 - -
Trme115376g00001 142 Gene3D Transferase(Phosphotransferase) domain 1 1 141 - -
Trme115376g00001 142 Pfam Protein tyrosine and serine/threonine kinase 2 135 IPR001245 GO:0004672|GO:0006468
Trme115376g00001 142 SUPERFAMILY Protein kinase-like (PK-like) 2 136 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme115376g00001 Trme-Chr115376 2 430 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme115376g00001 1 135 Receptor kinase-like Gene Family AT1G53420 31.507 3.07e-23 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Trme115376g00001 PK_Tyr_Ser-Thr 6.6e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme115376g00001 - - gmx:100806056 227.254