Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1153500g00001 GAGTTCAATGCTGTTAGAGTTCCTGCTTCTGAGGTGCAACTCGAAGACTTTGAACTTCGACCTGATGAAGCTGTGGCGGTGAATTTCGCGCTTATGCTACACCATATACCGGATGAAAGTGTCAACATTCATAATCATCGTGACCGGTTATTGCGATTGGCTAAGCACATCTCTCCTAAGGTGGTGACTCTAGTTGAGCAAGAATTCAATACC 213 0.4507 EFNAVRVPASEVQLEDFELRPDEAVAVNFALMLHHIPDESVNIHNHRDRLLRLAKHISPKVVTLVEQEFNT 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1153500g00001 71 Pfam GRAS domain family 1 70 IPR005202 -
Trme1153500g00001 71 ProSiteProfiles GRAS family profile. 1 71 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1153500g00001 Trme-Chr1153500 1 213 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1153500g00001 2 71 GRAS Transcription Factor Family AT2G04890 65.714 1.25e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trme1153500g00001 GRAS 6.5e-18 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1153500g00001 - - gmx:100785400 124.79