Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme115327g00001 ATGTTGACCAAAGTTGAAAGAGGTGAAGCGGAGTTGGATTGGTTGTCAAGGCATAAGATTGCGCTTGGTATCGCAGCTGGTCTTGAATACCTTCACACGAGCCATAGTCCGCGTATAATTCATCGAGATCTCAAGCCTGCAAACATTCTTCTTGATGATGATATGGAAGCTAGGATTGCGGATTTTGGACTTGCAAAAGCAATGCCTGATGCACAGACGCATATCAGTACTTCGAAAGTGGCTGGCACTGTGGGATATATCGCGCCTGAGTATCATCAGATATTCAAATTCAGTGACAAGTGTGACATATATAGCTTTGGTGTTATGCTTGGTGTTTTGGTGATGGGAAAACTTCCTTCTGATGATTTTTTTCAGCACACGGACGAGATGAGTTTGGTCAAGTGGATGAGAAATACTATAATTTCAGAAAATCCGAAGGACGCCATTGATGCAAGGCTCATTGGTAATGGTTTTGAGGAACAGATGCTTTTGGTTTTGAAGATTGCCTGCTTTTGCACCATGGATAATCCTAAGGAGAGGCCCGACA 547 0.4314 MLTKVERGEAELDWLSRHKIALGIAAGLEYLHTSHSPRIIHRDLKPANILLDDDMEARIADFGLAKAMPDAQTHISTSKVAGTVGYIAPEYHQIFKFSDKCDIYSFGVMLGVLVMGKLPSDDFFQHTDEMSLVKWMRNTIISENPKDAIDARLIGNGFEEQMLLVLKIACFCTMDNPKERPD 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme115327g00001 182 ProSiteProfiles Protein kinase domain profile. 1 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme115327g00001 182 SMART serkin_6 1 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme115327g00001 182 Gene3D Transferase(Phosphotransferase) domain 1 2 182 - -
Trme115327g00001 182 SUPERFAMILY Protein kinase-like (PK-like) 9 182 IPR011009 -
Trme115327g00001 182 Pfam Protein kinase domain 18 140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme115327g00001 182 ProSitePatterns Serine/Threonine protein kinases active-site signature. 39 51 IPR008271 GO:0004672|GO:0006468
Trme115327g00001 182 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 7 181 - -
Trme115327g00001 182 FunFam Leucine-rich repeat receptor-like protein kinase 1 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme115327g00001 Trme-Chr115327 71 617 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme115327g00001 1 182 Receptor kinase-like Gene Family AT2G31880 76.923 3.20e-103 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Trme115327g00001 Pkinase 3.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme115327g00001 - - gmx:100811980 327.791